DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and lrig1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_002938412.1 Gene:lrig1 / 100491453 XenbaseID:XB-GENE-494193 Length:1043 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
lrig1XP_002938412.1 LRRNT 28..59 CDD:214470
leucine-rich repeat 57..80 CDD:275378
PLN00113 <58..>370 CDD:215061
leucine-rich repeat 104..127 CDD:275380
leucine-rich repeat 128..151 CDD:275380
leucine-rich repeat 152..199 CDD:275380
leucine-rich repeat 200..223 CDD:275380
leucine-rich repeat 224..247 CDD:275380
leucine-rich repeat 248..295 CDD:275380
leucine-rich repeat 272..292 CDD:275380
leucine-rich repeat 296..319 CDD:275380
leucine-rich repeat 320..343 CDD:275380
LRR_8 343..405 CDD:338972
leucine-rich repeat 344..370 CDD:275380
leucine-rich repeat 371..394 CDD:275380
leucine-rich repeat 395..413 CDD:275380
LRRCT 429..477 CDD:214507
leucine-rich repeat 445..471 CDD:275380
IG 488..582 CDD:214652
Ig_1 603..677 CDD:143240
I-set 680..759 CDD:369462
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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