DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and XB5960289

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_002939044.1 Gene:XB5960289 / 100491172 XenbaseID:XB-GENE-5960290 Length:318 Species:Xenopus tropicalis


Alignment Length:347 Identity:76/347 - (21%)
Similarity:129/347 - (37%) Gaps:96/347 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 LQLLRLLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGAVQWTKDGFALGF 113
            :.|:.||.|.|.|:..|       .|:  |...::..|....:.|   |||..||          
 Frog     2 IALVMLLFVCVTATPWV-------SFQ--PDVGKIFFGESITLTC---NVASPVQ---------- 44

  Fly   114 SAVIPGFPRYSVLGDRKQGIYNLRIS-------NASIN-DDADYQCQVGPARLNSAIR---ANAK 167
                 |.|.||...|.|      |||       ||::. :..:||||.|.:..:.|::   ..:.
 Frog    45 -----GTPTYSWYRDNK------RISSGQRLFINAALGANSGNYQCQAGTSERSDAVKLKVTESY 98

  Fly   168 LTVISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNVEYKPEKREDTVEES 232
            :|:.:||.              :.|...|.|:|..|....::..|:|:              :.:
 Frog    99 VTLQAPPT--------------IYEGDSLILRCHSAVFGASSGAVFYK--------------DGT 135

  Fly   233 TAKRFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLYPPGPPYIEGYSAGETL 297
            |.|..|:.|:|.|.....:....|.|.   :.:..|.|:.....:||......|.:: .|:.|| 
 Frog   136 TLKSSTSDSALSLGTAYRNASGTYRCS---RNIFNDRPVIDEALISVKELFSKPQLQ-VSSNET- 195

  Fly   298 RRGQTVELMCRSRGGNPPAQLIWYKNGSQIRMAYRTSGR------LSENIYTFTAEAGDNKARFR 356
            |.|..:.:.|.:.  ..||     :..:.:|..:...||      ||..::...|:. :....:.
 Frog   196 REGANLTITCSTT--LTPA-----RGSTDLRFGFSKDGRSTQELLLSNKLHIRGAQV-NQSGYYT 252

  Fly   357 CEASNVMSQ-----NPLKAEVE 373
            ||...|.|:     |.|..:::
 Frog   253 CEVEAVASRIKKMSNTLYIQIQ 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 26/107 (24%)
Ig 76..155 CDD:299845 23/86 (27%)
IG_like 186..279 CDD:214653 17/92 (18%)
Ig 197..279 CDD:299845 15/81 (19%)
IG_like 296..376 CDD:214653 18/89 (20%)
Ig 300..361 CDD:299845 12/66 (18%)
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
XB5960289XP_002939044.1 Ig 16..94 CDD:299845 27/110 (25%)
Ig 101..165 CDD:299845 17/94 (18%)
Ig_2 186..273 CDD:290606 21/96 (22%)
IG_like 196..256 CDD:214653 13/67 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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