DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and kirrel1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_012808656.1 Gene:kirrel1 / 100489692 XenbaseID:XB-GENE-483274 Length:754 Species:Xenopus tropicalis


Alignment Length:749 Identity:195/749 - (26%)
Similarity:287/749 - (38%) Gaps:129/749 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGAVQWTKDGFALGFSAVIPGFPRYSVLGDRKQ 131
            |.|.|.:|...|.|..|:.|.:.::.|.|.|.:|.|||||||.|||....:..:|||.::|:.:.
 Frog    16 SQAFQPRFIQEPTDQTVVAGQKVVLTCVVLNYSGIVQWTKDGLALGLGQNLRIWPRYQIVGNVES 80

  Fly   132 GIYNLRISNASINDDADYQCQVGPARLNSAIRANAKLTVISPPASIEIKGYSHNSKVEVRENQDL 196
            |.|||.||||||.|||:::||...|.|.|   ..|||||:.||....|:|   ..::.:|.....
 Frog    81 GQYNLEISNASIVDDANFECQATEAALRS---QKAKLTVLIPPEDPVIEG---GPEILLRAGTPT 139

  Fly   197 QLKCIVANAKPAAQIVWYR-GNVE----YKPEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTEY 256
            .|.|...:|||.|.|||:| ||.:    |..|...|      .||.||.|.|.:.|...|....:
 Frog   140 NLTCRANSAKPPASIVWFRDGNQQAGDVYSTEVLAD------GKRATTVSYLLISPTDQDIGRVF 198

  Fly   257 TCQARHKALSPDMPMRATVQLSVLYPP------GPPYIEGYSAGETLRRGQTVELMCRSRGGNPP 315
            ||:..::|:...  ...:|:|:|.:||      .|         :|::.|:.|...| |...||.
 Frog   199 TCRTSNEAIPSG--KETSVKLNVHHPPTVTLSIHP---------QTVQEGERVRFTC-SATANPE 251

  Fly   316 AQ-LIWYKNGSQIRMAYRTSGRLSENIYTFTAEAGDNKARFRCEASNVMSQNPLKAEVELSVLFA 379
            .: ..|.|.|..|..| |.|...::..|:|..|.      ..||..|.:....:...|:  |.||
 Frog   252 IKGYRWAKGGMIIESA-RDSSYETQVDYSFFTEP------VSCEVHNEVGSTNVSTLVD--VQFA 307

  Fly   380 PTHVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMVGGRQ--VRNATS---KTIVSPEGGWTTT 439
            |..|....||...:|..|.|||..| .|||..:.|...|..  :.|...   |::...:.|....
 Frog   308 PRVVVEPKPTTTDMGSDVTLTCIWA-GNPPLTLTWTKKGSNMVLSNGNQLFLKSVKQEDAGPYVC 371

  Fly   440 SNITAVVEPNKRSLVVICHGLNMQLTENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLC 504
            ..|...:...:|.:.:..:|                      ||:|:. .|.|....|...|:.|
 Frog   372 KAIVPRIGVGEREVTLFVNG----------------------PPIIAS-EEVQYAARGDKGKVEC 413

  Fly   505 VSSGGNPLATLTWYKNDKRIN-------SVIRAADKSVSAEITILANV--SDNQAQYRCEASNSA 560
            ......|...:.|...:..:.       :|.|....|.......:.||  ||.|.:|.|.|.|| 
 Frog   414 FIGSTPPPDRIAWAWKENVLETGTLERYTVERTTSTSGVLSTLTINNVMESDFQTRYNCTAWNS- 477

  Fly   561 TEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEGINNT 625
                          |.|.|..|::...|:.|   ..||..::.......:.::  |..|..:...
 Frog   478 --------------FGPGTAIIQLLEREVVP---VGIIAGATIGAGILVIIFF--GFFIFFLYRR 523

  Fly   626 SKPGLWGGTVSTLEFRVNVT-----------QEMNGQVYTCQSANEALQRSAHEAVSL------D 673
            .|......|:..|:.:|...           :|....|.|.....:|:..|..:.|.|      |
 Frog   524 RKGSRKDVTLRKLDIKVETVNREPLTLHSDREEDTSSVSTATRVMKAIYSSFKDDVDLKQDLRCD 588

  Fly   674 VLYRPKF-VPPPSSTAVGVEGESLQVSLQTRANPTPVTYK--WTKDGTTIPQDGDHRIFADGGSL 735
            .:.|.:: :..|::....|...      ..|.|...|.|:  .|...|........|:....|..
 Frog   589 TIDREEYELKDPTNGYYNVRAH------DDRPNSRTVLYQDYRTTGATRFDGRPSSRLSHSSGYA 647

  Fly   736 NFTRLHRDDAGIYSCSASNSQGGATLNITVVVEY 769
            ......|..|..||...:.:...||.:.|..:.|
 Frog   648 QLNSFSRAPASDYSTDPTTTVTPATTDTTSQLSY 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 44/96 (46%)
Ig 76..155 CDD:299845 37/78 (47%)
IG_like 186..279 CDD:214653 29/97 (30%)
Ig 197..279 CDD:299845 28/86 (33%)
IG_like 296..376 CDD:214653 21/80 (26%)
Ig 300..361 CDD:299845 18/61 (30%)
Ig 380..454 CDD:299845 20/78 (26%)
IG_like 490..573 CDD:214653 20/91 (22%)
Ig 501..560 CDD:299845 16/67 (24%)
Ig 584..666 CDD:299845 14/92 (15%)
IG_like 585..666 CDD:214653 14/91 (15%)
I-set 678..767 CDD:254352 17/91 (19%)
IGc2 692..757 CDD:197706 12/66 (18%)
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
kirrel1XP_012808656.1 I-set 21..116 CDD:254352 44/97 (45%)
Ig 22..116 CDD:299845 44/96 (46%)
I-set 123..219 CDD:254352 31/106 (29%)
Ig 138..219 CDD:299845 28/88 (32%)
I-set 223..304 CDD:254352 23/99 (23%)
Ig_2 227..305 CDD:290606 22/96 (23%)
I-set 308..389 CDD:254352 20/81 (25%)
Ig_2 311..389 CDD:290606 19/78 (24%)
Ig5_KIRREL3 391..487 CDD:143306 28/133 (21%)
IG_like 399..487 CDD:214653 24/102 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8292
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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