DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and sigirr

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_002937693.3 Gene:sigirr / 100486638 XenbaseID:XB-GENE-492815 Length:397 Species:Xenopus tropicalis


Alignment Length:162 Identity:41/162 - (25%)
Similarity:61/162 - (37%) Gaps:47/162 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 CQARHKALSPDMPMRATVQLSVLYPPGPPYIEGYSAGETLRRGQTVELMCR---SRGGNPPAQLI 319
            |...|..|||. |:...     |:|               .:|.::.|.|.   |.|.|  ..|.
 Frog     6 CGGLHDFLSPS-PLDQD-----LWP---------------EKGSSLSLNCSLWVSGGCN--GTLR 47

  Fly   320 WYKNGSQIRMAYR---------TSGR--LSENIYTFTAEAGDNKARFRCEASNVMSQNPL----K 369
            |.|:|:.::..||         .|.:  ||..:|...:.|.| ..:|.||..|..:...|    |
 Frog    48 WLKDGTAVQDLYREQHSAWEGFNSSKWFLSSILYVNVSSAED-YGKFTCEVENATASFTLHKGEK 111

  Fly   370 AEVELSVLFAPTHVTVMGPTEARVGDIVPLTC 401
            |....:|:||...:|.:     .||.::.|.|
 Frog   112 AGHVAAVIFALAVLTAL-----IVGSVIYLKC 138

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653 6/20 (30%)
Ig 197..279 CDD:299845 6/20 (30%)
IG_like 296..376 CDD:214653 25/97 (26%)
Ig 300..361 CDD:299845 21/74 (28%)
Ig 380..454 CDD:299845 5/22 (23%)
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
sigirrXP_002937693.3 Ig strand A 14..19 CDD:409353 3/5 (60%)
Ig_3 27..99 CDD:404760 21/74 (28%)
Ig strand B 30..39 CDD:409353 2/8 (25%)
Ig strand C 43..49 CDD:409353 2/7 (29%)