DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and ncam1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_017951446.2 Gene:ncam1 / 100038291 XenbaseID:XB-GENE-923171 Length:1119 Species:Xenopus tropicalis


Alignment Length:1145 Identity:253/1145 - (22%)
Similarity:399/1145 - (34%) Gaps:307/1145 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 AVVEPNKRSLVVICHGLNMQLTENVVSTHTINVLYPPAPPLISGYMEGQIIP------AGSVQKL 502
            :|...:.|...:.|....:|:.:.:.:.:.|.....         :|..|:|      .|..:..
 Frog     7 SVTNRSSRRNSIACRITMLQIKDLIWTLYFIGTAVA---------LEVTIVPDQGEISLGESKFF 62

  Fly   503 LCVSSGGNPLATLTWYK--NDKRIN----SVIRAADKSVSAEITILANVSDNQAQ-YRCEASNSA 560
            ||..||  ..:.::||.  .:|.:|    ||::  :...::.:||. |||...|. |:|.|| |.
 Frog    63 LCQVSG--EASDISWYSPAGEKLLNQQQISVVK--NDGYTSTLTIY-NVSSQDAGIYKCVAS-SE 121

  Fly   561 TEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDG--------- 616
            ||.....:..|.: :...|.|....|:|...|.:|.||||.||| .|:.::|...|         
 Frog   122 TEGESEGTVNLKI-YQKLTFKNAPTPQEFIEGEDAVIICDVSSS-IPSIITWRHRGKDVILKKDV 184

  Fly   617 ---------IPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQ----SANEALQRSAHE 668
                     :.|.|:..|.:     ||                  |.|:    :..|...:..|.
 Frog   185 RFVVLSNNYLQIRGVKKTDE-----GT------------------YRCEGRILARGEINYKDIHV 226

  Fly   669 AVSLDVLYRPKFVPPPSS------TAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHR 727
            .|:         |||...      .|.....||:.:|......|.| ...|.|.|..| :||:.:
 Frog   227 IVN---------VPPTVQARQIRVNATANMDESVVLSCDADGFPDP-EISWLKKGEPI-EDGEEK 280

  Fly   728 IF--ADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAML 790
            |.  .|...:...|:.:||...|||.|:|..|.|...|.:.| |.....:..||......::..|
 Frog   281 ISFNEDKSEMTIYRVGKDDEAEYSCIANNKAGEAEAIILLKV-YAKPKITYVENKTAVELDEITL 344

  Fly   791 SCTVEGKPLTEEHVKWERVGYDMTVKTSTTFAN-------GTSYLHIKDAKREDVGNFRCVADNR 848
            :|...|.|:..  :.|.....:::.:..|...:       ..|.|.:||.:..|.|.:.|:|.|.
 Frog   345 TCEASGDPIPS--ISWRTATRNISSEEKTLDGHIVVKEHIRMSALTLKDIQYTDAGEYICIASNA 407

  Fly   849 VDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTY 913
            :.... |.:...|::||:| |.|.::  .:..|....:.|.....|.....|.:|.:.||.:   
 Frog   408 IGEDM-RAMYFEVQYAPKI-KGPVVV--YTWEGNPVNITCEVLAYPSAVVSWFRDGQLLPSS--- 465

  Fly   914 KYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELG-EAVETVRLEITSQPDPPLSLNILN 977
              .....||.|....|:|.|:..:..|:|.|.|.|.|.:| |:.|.:.:    |.|.|.|..||.
 Frog   466 --NFSNIKIYSGPSSSSLEVNPDSENDFGNYNCTAVNSIGHESSEFILV----QADTPSSPAILR 524

  Fly   978 VT--HDTVTLAW-TPGFDGGLK-ASYRVRYRMADREQY--KYIDGLPNSHK--LTIGGLRMNTLY 1034
            |.  ..||.:.: .|...||:. ..|:..:::..:|::  ||.|....|.:  :|:.||:..|.|
 Frog   525 VEPYSSTVMVIFDEPDATGGVPILKYKAEWKVIGQEKWHAKYYDAKEVSAESIITVTGLKPETSY 589

  Fly  1035 L--FSVMSWNELGQSSYLPDLARAETKEAPPPSHPASSL---------------------GGGP- 1075
            |  .|.::...||.|:...:........|.|...|::..                     ||.| 
 Frog   590 LVKLSAVNGKGLGDSTPSQEFTTQPVNIAKPQGEPSAPKLVWHLNEDGNNVKVEIIKQDDGGSPI 654

  Fly  1076 ---------------PTTSQTPLGGTSGMLLV---GVGAGIVVVLLNVFVIGCCLHKRNEKRLKR 1122
                           ....:.|......||..   .|...::||..|.      ..|....||..
 Frog   655 RHYLVNYRALNAADWKPEMRVPSSSHHVMLKALEWNVEYEVIVVAENQ------QGKSKPARLSF 713

  Fly  1123 GLELMPAELTEDSSNTPNL---VIIGISLAAFGFLLVNASLVAWFF------------------- 1165
            .....|...|..:|.:..|   .|:||.:..|..|||...:..:|.                   
 Frog   714 RTTAKPTATTATTSASAGLGTGAIVGILIVIFVLLLVVVDVTCFFLNKCGLLMCIAVNFCGKAGP 778

  Fly  1166 ---------------------------VHQRRKKVAETTNQ--------------PA-KTATIEM 1188
                                       ..:.|....:.:||              || .|||:|.
 Frog   779 GAKGKDIEEGKAAFSKDESKEPIVEVRTEEERTPNHDGSNQIEPNETTPLTEPEHPADTTATVED 843

  Fly  1189 YAPS-----SYNDTVTGETLSSV--SEKSESYSNEGSSQP---------EYIDEVRKKA-ASTY- 1235
            ..||     :.:||:| ||.::.  |..|||.:...|:.|         :.|.....|| |||. 
 Frog   844 MLPSVTTVTTNSDTIT-ETFATAQNSPTSESTTLTSSTAPPPTTDSNTVQSIQATPSKAEASTAS 907

  Fly  1236 ------------LVEGSDMPPPRYQKDGTLPVIYPNNVVNACTLPHPRHNNGSAAIHMTRDDQML 1288
                        ||:.||.|.....|.|.       |...|.        |.|||.......:.:
 Frog   908 SPPPTSSPKVAPLVDLSDTPTNNPSKAGA-------NQAGAL--------NPSAATSAAEPPKAI 957

  Fly  1289 ISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYPPMEYPAALDFTA---------QPMPMAHLQPMT 1344
            |.....:|:.:.:|||......:..::..|..| |..||...|.         :...:::.:|:.
 Frog   958 IKPVATVPANATSPPPTPEPKQVKQEQSGSKSP-EKEAAQPSTVKSPTEATKDESASLSNTKPLQ 1021

  Fly  1345 VTSLATNGG----PTL---------IGNGSVAAVAGGSGT 1371
            ......:||    |.:         :|..:.||||.|..:
 Frog  1022 GEDFQIDGGTFKTPEIDLAKDVFAALGTATPAAVASGKAS 1061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 2/9 (22%)
IG_like 490..573 CDD:214653 28/95 (29%)
Ig 501..560 CDD:299845 20/65 (31%)
Ig 584..666 CDD:299845 22/103 (21%)
IG_like 585..666 CDD:214653 22/102 (22%)
I-set 678..767 CDD:254352 28/96 (29%)
IGc2 692..757 CDD:197706 21/66 (32%)
Ig 788..849 CDD:143165 15/67 (22%)
Ig 885..960 CDD:143165 21/75 (28%)
FN3 967..1051 CDD:238020 27/93 (29%)
ncam1XP_017951446.2 Ig 43..136 CDD:416386 28/99 (28%)
Ig strand A 43..48 CDD:409353 1/4 (25%)
Ig strand A' 51..55 CDD:409353 0/3 (0%)
Ig strand B 57..67 CDD:409353 3/9 (33%)
Ig strand C 71..77 CDD:409353 1/5 (20%)
Ig strand C' 80..82 CDD:409353 0/1 (0%)
Ig strand D 89..95 CDD:409353 2/7 (29%)
Ig strand E 97..105 CDD:409353 2/8 (25%)
Ig strand F 112..120 CDD:409353 4/8 (50%)
Ig strand G 124..135 CDD:409353 1/11 (9%)
IG 144..210 CDD:214652 20/89 (22%)
IgI_3_NCAM-1 231..325 CDD:143207 29/96 (30%)
Ig strand B 251..255 CDD:143207 0/3 (0%)
Ig strand C 264..268 CDD:143207 0/3 (0%)
Ig strand E 288..292 CDD:143207 0/3 (0%)
Ig strand F 302..307 CDD:143207 3/4 (75%)
Ig strand G 315..318 CDD:143207 0/2 (0%)
Ig 324..419 CDD:416386 18/97 (19%)
Ig strand A 324..329 CDD:409353 0/4 (0%)
Ig strand A' 333..337 CDD:409353 1/3 (33%)
Ig strand B 341..349 CDD:409353 2/7 (29%)
Ig strand C 355..361 CDD:409353 1/7 (14%)
Ig strand C' 364..367 CDD:409353 0/2 (0%)
Ig strand D 375..381 CDD:409353 0/5 (0%)
Ig strand E 384..390 CDD:409353 2/5 (40%)
Ig strand F 398..406 CDD:409353 3/7 (43%)
Ig strand G 409..419 CDD:409353 1/10 (10%)
Ig_3 423..500 CDD:404760 22/84 (26%)
Ig strand B 439..443 CDD:409353 0/3 (0%)
Ig strand C 452..456 CDD:409353 0/3 (0%)
Ig strand E 479..483 CDD:409353 2/3 (67%)
Ig strand F 493..498 CDD:409353 2/4 (50%)
FN3 517..612 CDD:238020 26/94 (28%)
FN3 624..709 CDD:238020 12/90 (13%)
Herpes_BLLF1 <776..>1116 CDD:282904 62/303 (20%)
PRK07994 <918..1075 CDD:236138 34/160 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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