DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wit and Tgfbr2

DIOPT Version :9

Sequence 1:NP_001261395.1 Gene:wit / 44096 FlyBaseID:FBgn0024179 Length:913 Species:Drosophila melanogaster
Sequence 2:XP_008764912.1 Gene:Tgfbr2 / 81810 RGDID:69651 Length:592 Species:Rattus norvegicus


Alignment Length:539 Identity:146/539 - (27%)
Similarity:240/539 - (44%) Gaps:111/539 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 CPDGYTFCFTIWNQTANGARVVKQGCWKDNTDRTSICSQSECT--------SSAPT-------SK 118
            |......|..:|.:.            ..|....::|...:.|        :::||       ..
  Rat   102 CEKPQEVCVAVWRKN------------DKNITLETVCHDPKFTYHGFTLEDATSPTCVMKEKKRA 154

  Fly   119 TSSLYYCCCSGGVCNAQYSVVEPAPLELGSNEGRTSITNRATEKQHQSFLASTMLGLAG------ 177
            ..:.:.|.|:...|| .|.:.        :.|..||..:          |...::.:.|      
  Rat   155 GETFFMCSCNTEECN-DYIIF--------NEEYTTSSPD----------LLLVIIQVTGVSLLPP 200

  Fly   178 -GLTALTIGIFLAVQYCRTAKEKPEPEESP--------------LAPSGPGYSSNLRNVDNMN-- 225
             |:....|.||...:..|..|..|..|.|.              |.......||...|..|.|  
  Rat   201 LGIAIAVIAIFYCYRVHRQQKLSPSWESSKPRKLMDFSDNCAIILEDDRSDISSTCANNINHNTE 265

  Fly   226 -----LIGMLGSGKYGTVMKGLLHD------QEVAVKIYPEEHHQYYVNERNIYALPLMECPALL 279
                 |..::|.|::..|.|..|..      :.|||||:|.|.:..:..|::|::...::...:|
  Rat   266 LLPIELDTLVGKGRFAEVYKAKLKQNTSEQFETVAVKIFPYEEYSSWKTEKDIFSDINLKHENIL 330

  Fly   280 SYFGYDERCTMDGRMEYQLVLSLAPLGCLQDWLIANTLTFSECCGMLRSITRGISHLHTELRLGD 344
            .:...:||.|..|: :|.|:.:....|.||::|..:.:::.:...:..|:.|||:|||::     
  Rat   331 QFLTAEERKTEMGK-QYWLITAFHAKGNLQEYLTRHVISWEDLRKLGSSLARGIAHLHSD----- 389

  Fly   345 QHKPC------VAHRDINTRNVLVQADLSCCIADFGFALKVFGSKYEYKGEVAMAETKSINEVGT 403
             |.||      :.|||:.:.|:||:.||:||:.|||.:|::       ...:::.:..:..:|||
  Rat   390 -HTPCGRPKMPIVHRDLKSSNILVKNDLTCCLCDFGLSLRL-------DPTLSVDDLANSGQVGT 446

  Fly   404 LRYMAPELLEGAVNLRDCETSLKQMDVYALGLVLWEVATRCSDFYAPGQATPPYKAPYEQEVGSH 468
            .||||||:||..:||.:.| |.||.|||::.|||||:.:||:   |.|: ...|:.|:..:|..|
  Rat   447 ARYMAPEVLESRMNLENME-SFKQTDVYSMALVLWEMTSRCN---AVGE-VKDYEPPFGSKVREH 506

  Fly   469 PSFDQMQALVVRHKARPLFPTGWGGGAAAKVVRDTCEDCWDHDADARLTSLCAEERMQEM---ST 530
            |..:.|:..|:|.:.||..|:.|......::|.:|..:|||||.:||||:.|..||..|:   ..
  Rat   507 PCVESMKDNVLRDRGRPEIPSFWLNHQGIQIVCETLTECWDHDPEARLTAQCVAERFSELEHPDR 571

  Fly   531 LRPRAQAQ---PSSPLLNT 546
            |..|:.:|   |....|||
  Rat   572 LSGRSCSQEKIPEDGSLNT 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
witNP_001261395.1 snake_toxin 57..133 CDD:264434 10/78 (13%)
STYKc 226..517 CDD:214568 100/302 (33%)
STKc_BMPR2_AMHR2 228..528 CDD:270956 104/311 (33%)
Tgfbr2XP_008764912.1 ecTbetaR2 74..177 CDD:286061 13/95 (14%)
STYKc 269..566 CDD:214568 105/315 (33%)
STKc_TGFbR2_like 273..567 CDD:270957 105/312 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG3653
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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