DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wit and tgfbr2b

DIOPT Version :9

Sequence 1:NP_001261395.1 Gene:wit / 44096 FlyBaseID:FBgn0024179 Length:913 Species:Drosophila melanogaster
Sequence 2:NP_878275.2 Gene:tgfbr2b / 30739 ZFINID:ZDB-GENE-980526-375 Length:556 Species:Danio rerio


Alignment Length:513 Identity:140/513 - (27%)
Similarity:227/513 - (44%) Gaps:105/513 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 CPDGYTFCFTIWNQTANGARVVKQGCWKDNTDRTSIC---------------SQSECTSSAPTSK 118
            |......|..||.|:            .||....::|               :.::|......|.
Zfish    67 CESPDEICVAIWRQS------------DDNNTIETLCHNPTVPLYGIMVENNNNTKCEMKKRISN 119

  Fly   119 TSSLYYCCCSGGVCNAQYSVVEPAPLELGSNEGRTSITNRATEKQHQSFLASTMLGLAGGLTALT 183
            :...:.|.|:...||.......|                  |..|....:..::|.|. .|..|.
Zfish   120 SGPFHICSCNEVECNDMLLFKLP------------------TNNQVVLVILVSLLPLL-VLAVLV 165

  Fly   184 IGIFLAVQYCRTAK------EKPEPEESP-----------------LAPSGPGYSSNL-RNVDNM 224
            |..|...:..|..|      :||...:.|                 .:.|...:::|: .|:|.:
Zfish   166 IASFYWYRLYRRRKLDEWETKKPSKHKGPKGALDCSDACAIMMDDDRSDSSSTHANNINHNMDPL 230

  Fly   225 --NLIGMLGSGKYGTVMKGLLHD------QEVAVKIYPEEHHQYYVNERNIYALPLMECPALLSY 281
              .|...:|.|::..|.|..|..      :.|||||:|.|.:..:.||::|:....::...:|.:
Zfish   231 PIELDLQVGKGRFAEVYKAKLRQSPSEQFETVAVKIFPYEEYASWKNEKDIFQDIDLKHENILHF 295

  Fly   282 FGYDERCTMDGRMEYQLVLSLAPLGCLQDWLIANTLTFSECCGMLRSITRGISHLHTELRLGDQH 346
            ...:||..   ..:|.|:.:..|.|.||::|:.:.|::.:...:..|:..|::|||::      |
Zfish   296 LTAEERKV---EKQYWLITAFHPRGNLQEYLMRHLLSWEDLRLLGSSLASGVAHLHSD------H 351

  Fly   347 KPC------VAHRDINTRNVLVQADLSCCIADFGFALKVFGSKYEYKGEVAMAETKSINEVGTLR 405
            .||      :.|||:.:.|:||:.||:||:.|||..|::..|       :::.|..:..:|||.|
Zfish   352 TPCGRPKVPIVHRDLKSSNILVKNDLTCCLCDFGLGLRLDNS-------LSVDELANSGQVGTAR 409

  Fly   406 YMAPELLEGAVNLRDCETSLKQMDVYALGLVLWEVATRCSDFYAPGQATPPYKAPYEQEVGSHPS 470
            |||||:||..:||.:.| |.||.|||::.|||||:.:||:   |.|: ...|:.|:..:|..||.
Zfish   410 YMAPEVLESRINLENIE-SFKQTDVYSMALVLWEITSRCN---AIGE-VKDYEPPFGSKVREHPC 469

  Fly   471 FDQMQALVVRHKARPLFPTGWGGGAAAKVVRDTCEDCWDHDADARLTSLCAEERMQEM 528
            .:.|:..|:|.:.||..|:.|........|..|..:|||||.:||||:.|..||..||
Zfish   470 VESMKDNVLRDRGRPEIPSSWMKHQGVAAVCATINECWDHDPEARLTAQCVAERFNEM 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
witNP_001261395.1 snake_toxin 57..133 CDD:264434 12/78 (15%)
STYKc 226..517 CDD:214568 101/302 (33%)
STKc_BMPR2_AMHR2 228..528 CDD:270956 105/311 (34%)
tgfbr2bNP_878275.2 ecTbetaR2 39..139 CDD:286061 14/83 (17%)
STYKc 232..520 CDD:214568 103/308 (33%)
STKc_TGFbR2_like 237..528 CDD:270957 107/312 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG3653
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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