DRSC/TRiP Functional Genomics Resources

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Protein Alignment fus and rbm12b.2

DIOPT Version :10

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:XP_012820298.2 Gene:rbm12b.2 / 734026 XenbaseID:XB-GENE-5751350 Length:695 Species:Xenopus tropicalis


Alignment Length:451 Identity:99/451 - (21%)
Similarity:167/451 - (37%) Gaps:129/451 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 IRESRDMVTVIQTLLQAGHKFA-ANELVNLV-----LEPGICSIDDEVDG--------NCIVRAR 284
            :|.|...:.::...|:||.|.| ...|..|.     |.||:.::   :.|        :.:::.:
 Frog     1 MRSSLARLKLVSPPLRAGRKRADVGGLSALYPQFGWLIPGLEAL---IGGKFFSGPKMSVVIKLQ 62

  Fly   285 GLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA------------- 336
            ||..:::..||.:||..|::.||.:.:    .|.:.|||.|.|...|....|             
 Frog    63 GLSIEANSIDIRQFFSNLDIPKGYIYI----TGGKYGEAFIIFSSYEDARRAISYSGRPLKNSSV 123

  Fly   337 ---------LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRMRGLPYDAT 392
                     ::|....|.:|:..|..|||.      |..|.:..::..|...:.:.:.|:|.:.|
 Frog   124 HLSISSQAEMQRALEEINSRFSSVNSASGN------GTPSYKETSYFRKPDTLYVYVHGMPLNTT 182

  Fly   393 AKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYI 457
            ..::..|| .|.|.        |..:|:|.|.|...|:|.|.|....||.:|:.|..:.:|...:
 Frog   183 KVEIKSFF-VGLTV--------EDAIFLKYPSGLRNGNAIVKFTTSGDAHEAVKRSGQQMGSTPV 238

  Fly   458 ELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANL 522
            .|..|..||..:|            ||..::          :..|.|:|.......|        
 Frog   239 SLMLSDEAEWIKV------------GGVRAR----------KRELSPEVSFDDRKKS-------- 273

  Fly   523 CPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVH-------- 579
                    :|.....||.:       |.|. |||....|:::...|.:|..|  .||        
 Frog   274 --------VPHSRHELIKT-------RARS-PYEERFVHLINLPYDVSKRDI--KVHFGNLAMKD 320

  Fly   580 ----MVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKKY--RYIEVFQCSGDDM 633
                .:.:..|:.:.|.|::. .:.:....|||.|        |::  |.::|...|..||
 Frog   321 SQITFLCDWSGKRTREGFVKFTSINQYRDACAQHR--------KEFCSRLVDVLPISERDM 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:447876
RRM1_Fusilli 280..359 CDD:241182 24/100 (24%)
RRM2_Fusilli 363..462 CDD:410137 25/98 (26%)
RRM3_Fusilli 545..629 CDD:241187 21/98 (21%)
rbm12b.2XP_012820298.2 RRM_SF 56..129 CDD:473069 17/76 (22%)
RRM_SF 168..253 CDD:473069 26/105 (25%)
RRM_SF 293..373 CDD:473069 17/89 (19%)
RRM_SF 407..482 CDD:473069
RRM_SF 629..693 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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