DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fus and rbm12bb

DIOPT Version :9

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_001277069.1 Gene:rbm12bb / 334496 ZFINID:ZDB-GENE-030131-6428 Length:685 Species:Danio rerio


Alignment Length:460 Identity:96/460 - (20%)
Similarity:159/460 - (34%) Gaps:155/460 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHI 344
            ::|.:||...:..:||..||.||.:..|||.:    :|....||.|.|...|....|:.|....|
Zfish     4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHI----IGGELEEAFIIFASDEDARRAMSRSGGCI 64

  Fly   345 ---------------------GTRYIE----------VYRASGE-----------------DFLA 361
                                 .||..|          |.|||.|                 |...
Zfish    65 KGSTVNLFLSSKSEMQSVLEESTRRSEFKNRAMYKEPVKRASAEQGPLPFSKDTRPDVRRADHPE 129

  Fly   362 IAG--------GASNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVL 418
            :.|        .|..:......:.|:|.:::.|:|:.||...|.:||.....         :.:|
Zfish   130 MRGRPASSTFSEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAGLKV---------DDIL 185

  Fly   419 FVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAE----------------- 466
            |:|.|.|..:|::.|.|..:.||.:.|.|.|:.:|.|||::.|.|..|                 
Zfish   186 FLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLKEGGLIVAADMRKRT 250

  Fly   467 -VQQVLNRSMDPKNYES---GGGHSQ--------PPLIAQLPTMQLPLLP------QVGAHSLSH 513
             |::|  ||..|.:|.|   ...|.:        |||: :...:::.|.|      |:...|...
Zfish   251 PVERV--RSRSPISYRSRSRSPSHEEYCIMFENLPPLV-EKRDVRVFLQPVALKDDQIIIFSSKK 312

  Fly   514 S--------LGASPANLCPPVPPP----------ALPLPTQHLIT-------------------- 540
            .        :..|..:.|..:...          ..|:..:.::|                    
Zfish   313 DDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKMVTMLESSIDARGEEKGSRRSAE 377

  Fly   541 -SGTTKN-------CIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMD 597
             |.:.:|       |:.:|.||::.....|:.|...:|  :....|.::.:.:|...|||.:...
Zfish   378 ASQSQRNTPDSQLRCLYVRNLPFDVRKVEIMDFFHGYA--LTEDRVILLRDERGAGLGEALVIFQ 440

  Fly   598 LEESA 602
            .|:.|
Zfish   441 TEKEA 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:299142
RRM1_Fusilli 280..359 CDD:241182 29/126 (23%)
RRM2_Fusilli 363..462 CDD:241185 28/106 (26%)
RRM3_Fusilli 545..629 CDD:241187 15/65 (23%)
rbm12bbNP_001277069.1 RRM1_RBM12B 2..80 CDD:241188 21/79 (27%)
RRM2_RBM12B 157..234 CDD:241190 26/85 (31%)
RRM_SF 275..355 CDD:302621 10/80 (13%)
RRM <352..559 CDD:223796 17/96 (18%)
RRM_SF 391..466 CDD:302621 14/57 (25%)
RRM 521..>682 CDD:223796
RRM5_RBM12_like 609..683 CDD:240959
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590313
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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