DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fus and hnrnph1l

DIOPT Version :9

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_997754.2 Gene:hnrnph1l / 321556 ZFINID:ZDB-GENE-030131-275 Length:407 Species:Danio rerio


Alignment Length:494 Identity:121/494 - (24%)
Similarity:206/494 - (41%) Gaps:129/494 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 DDEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVAL--CLSPLGRRNGEALIRFVCQEHRD 334
            |||   ..:||.|||||..|.:::::||.|..::..|.|:  ..:..||.:|||.:....::...
Zfish     3 DDE---GFVVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLK 64

  Fly   335 MALKRHKHHIGTRYIEVYRASGEDF---LAIAGGASNEAQAFLSKGAQVIIRMRGLPYDATAKQV 396
            :|:|:.:..:|.||:||::::..:.   |...|....|.:      ...::|:||||:..:.:::
Zfish    65 IAVKKDRESMGHRYVEVFKSNNVEMDWVLKHTGPNCPETE------GDGLVRLRGLPFGCSKEEI 123

  Fly   397 LDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFR 461
            :.||:..:..|       .|:.......||:||:|||.||::..|.|||.:|:|.||.||||:|:
Zfish   124 VQFFSGLEIVP-------NGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFK 181

  Fly   462 STTAEVQ---QVLNRSM-----DPKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLS------ 512
            |:.|||:   :...:.|     .|.:..||||.                    |.:.:|      
Zfish   182 SSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGR--------------------GYNGMSRGGSFD 226

  Fly   513 ------HSLGASP------ANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVEHILHF 565
                  :..|.|.      .|.                  ..||.:|:.:|||||.|....|.:|
Zfish   227 RMRRGGYGGGVSDGRYGDGGNF------------------QSTTGHCVHMRGLPYRATEPDIYNF 273

  Fly   566 LDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSG 630
            ......    ..||:.|...|:.:|||.::....|.| :.|..:....|    ::||:|:|    
Zfish   274 FSPLNP----VRVHIEIGPDGRVTGEADVEFATHEDA-VAAMSKDKANM----QHRYVELF---- 325

  Fly   631 DDMNMVL---NGGLASPVAQPPPPHLGHAHKQQSLLAATTGMFSSAGQSPTTVAAGTAQSPLGGT 692
              :|...   |||....:.........:.|..|.:....||.:||             ||.:||.
Zfish   326 --LNSTAGGSNGGYGGQMMGGMGNQSSYGHGGQQMGGGYTGGYSS-------------QSSMGGY 375

  Fly   693 HTHTHPHSHAHAHATGHAHAAAAAAHHGLSASSAMLPGL 731
            :.:             ::....:.:::|.|..|..:.|:
Zfish   376 NDY-------------NSQGGMSNSYYGGSRGSVGMNGM 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:299142
RRM1_Fusilli 280..359 CDD:241182 25/80 (31%)
RRM2_Fusilli 363..462 CDD:241185 33/98 (34%)
RRM3_Fusilli 545..629 CDD:241187 24/83 (29%)
hnrnph1lNP_997754.2 RRM <1..>74 CDD:223796 23/73 (32%)
RRM_SF 6..84 CDD:302621 25/77 (32%)
RRM <58..>168 CDD:223796 32/122 (26%)
RRM_SF 89..184 CDD:302621 35/107 (33%)
zf-RNPHF <237..255 CDD:116685 4/35 (11%)
RRM3_hnRNPH_hnRNPH2_hnRNPF 254..329 CDD:241178 25/89 (28%)
RRM <254..>310 CDD:223796 18/60 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590308
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.750

Return to query results.
Submit another query.