DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fus and Hnrnph2

DIOPT Version :9

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_001014041.1 Gene:Hnrnph2 / 308650 RGDID:1549784 Length:449 Species:Rattus norvegicus


Alignment Length:515 Identity:126/515 - (24%)
Similarity:202/515 - (39%) Gaps:154/515 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IVRARGLPWQSSDQDIAKFFRGLNVAKG--GVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKH 342
            :|:.|||||..|.:::.:||....:..|  ||....:..||.:|||.:....::...:|||:.:.
  Rat    12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRE 76

  Fly   343 HIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRMRGLPYDATAKQVLDFFTTGDTPP 407
            .:|.||:||::::..:...:.......:....:.|   .:|:||||:..:.::::.||:..:..|
  Rat    77 TMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDG---FVRLRGLPFGCSKEEIVQFFSGLEIVP 138

  Fly   408 CHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPKALGRHRESIGQRYIELFRSTTAEVQQVLN 472
                   .|:.......||:||:|||.||::..|.|||.:|:|.||.||||:|:|:.|||:.   
  Rat   139 -------NGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRT--- 193

  Fly   473 RSMDPKNYESGGGHSQPPLIAQLPTMQLP-LLPQVGAHSLSHSLGASPA---------------- 520
                         |..||  .:|.|||.| ...:.||....:|:|....                
  Rat   194 -------------HYDPP--RKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGY 243

  Fly   521 ---------------------NLCPPVPPPALPLPTQHLITSG------TTKNCIRLRGLPYEAM 558
                                 |.|       ....:.|....|      ||.:|:.:|||||.|.
  Rat   244 DDYGGYNDGYGFGSDRFGRDLNYC-------FSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRAT 301

  Fly   559 VEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYI 623
            ...|.:|......    ..||:.|...|:.:|||.::....|.| :.|..:....|    ::||:
  Rat   302 ENDIYNFFSPLNP----MRVHIEIGPDGRVTGEADVEFATHEDA-VAAMAKDKANM----QHRYV 357

  Fly   624 EVFQCSGDDMNMVLNGGLASPVAQPPPPHLGHAHKQQSLLAATTGMFSSAGQSPTTVAAGTAQSP 688
            |:|          ||                                |:||.|            
  Rat   358 ELF----------LN--------------------------------STAGTS------------ 368

  Fly   689 LGGTHTHTHPHSHAHAHATGHAHAAAAAAHHGLSASSAMLPGLSAAASASGLAS-FMSAG 747
             ||.      :.|::.....::.|.|:...:|......|  |||..:|..|.|| .:|||
  Rat   369 -GGA------YDHSYVELFLNSTAGASGGAYGSQMMGGM--GLSNQSSYGGPASQQLSAG 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:299142
RRM1_Fusilli 280..359 CDD:241182 25/80 (31%)
RRM2_Fusilli 363..462 CDD:241185 32/98 (33%)
RRM3_Fusilli 545..629 CDD:241187 24/83 (29%)
Hnrnph2NP_001014041.1 RRM1_hnRNPH_hnRNPH2_hnRNPF 10..88 CDD:410128 25/75 (33%)
RRM2_hnRNPH_hnRNPH2_hnRNPF 103..192 CDD:410130 35/98 (36%)
2 X 16 AA Gly-rich approximate repeats 234..433 53/265 (20%)
zf-RNPHF 257..290 CDD:369688 6/39 (15%)
RRM3_hnRNPH_hnRNPH2_hnRNPF 289..364 CDD:410133 26/125 (21%)
2 X 19 AA perfect repeats 354..392 15/98 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.