DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fus and Grsf1

DIOPT Version :9

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_001094360.1 Gene:Grsf1 / 305256 RGDID:1310858 Length:479 Species:Rattus norvegicus


Alignment Length:443 Identity:123/443 - (27%)
Similarity:199/443 - (44%) Gaps:88/443 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 LQAPTLPMPQSIAEMLGELNISSVEDNDFYIRESRDMVTVIQTLLQAGHKFAANELVNLVLEPGI 268
            |:||.|  |:|:|...|...        .|.:||:  .|.::.|         ..|....|.|. 
  Rat    97 LRAPLL--PRSLAAAAGPAR--------GYCQESK--TTYLEDL---------PPLPEYELSPS- 139

  Fly   269 CSIDDEVDGNCIVRARGLPWQSSDQDIAKFFRGLNV--AKGGVALCLSPLGRRNGEALIRFVCQE 331
             .:.:|||...::||:||||..:.:|:..||....:  ::.|:...|:..|:|.|:|||....::
  Rat   140 -KLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQ 203

  Fly   332 HRDMALKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRMRGLPYDATAKQV 396
            ....||::|:.::|.||:|||..:.||..|:......:....||.|   ::|:|||||....|.:
  Rat   204 DVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPTPALSDG---VVRLRGLPYSCNEKDI 265

  Fly   397 LDFFTTGDTPPCHVLDGNEGVLFVKKPDG-RATGDAFVLFANETDAPKALGRHRESIGQRYIELF 460
            :|||.     ..:::|    :.||....| |.||:|:|.|.....|.:||.:|||.||.||||:|
  Rat   266 VDFFA-----GLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 321

  Fly   461 RSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQLPLLPQVGAHSLSHSLGASPANLCPP 525
            .|...||:..:            |.|....:::. ||.:....|:|.......:..|.|......
  Rat   322 PSRRNEVRTHV------------GSHKGKKMVSS-PTTKYITEPEVVFEEHEVNEDARPMTAFES 373

  Fly   526 VPPPALP---------------LPTQHLITSGTTKNCIRLRGLPYEAMVEHILHFLDDFA--KHI 573
            .....||               :|:.|.         :.:||||::|..:.|::|   ||  |.:
  Rat   374 EKEIELPKEMSDKLAEAVDFGAVPSLHF---------VHMRGLPFQANAQDIINF---FAPLKPV 426

  Fly   574 IYQGVHMVINAQGQPSGEAFIQMDLEESARLCAQRRHNHYMMFGKKYRYIEVF 626
               .:.|..::.|:.:|||.:..|..|.|.....:..:|.     ::||||:|
  Rat   427 ---RITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHV-----QHRYIELF 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:299142
RRM1_Fusilli 280..359 CDD:241182 27/80 (34%)
RRM2_Fusilli 363..462 CDD:241185 36/99 (36%)
RRM3_Fusilli 545..629 CDD:241187 24/84 (29%)
Grsf1NP_001094360.1 RRM1_GRSF1 148..226 CDD:241174 26/77 (34%)
RRM2_GRSF1 248..321 CDD:240949 33/84 (39%)
RRM 328..>458 CDD:223796 31/157 (20%)
RRM3_GRSF1 400..474 CDD:241177 25/92 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349093
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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