DRSC/TRiP Functional Genomics Resources

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Protein Alignment fus and GRSF1

DIOPT Version :9

Sequence 1:NP_524691.1 Gene:fus / 44095 FlyBaseID:FBgn0023441 Length:967 Species:Drosophila melanogaster
Sequence 2:NP_002083.4 Gene:GRSF1 / 2926 HGNCID:4610 Length:480 Species:Homo sapiens


Alignment Length:375 Identity:110/375 - (29%)
Similarity:180/375 - (48%) Gaps:63/375 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 IDDEVDGNCIVRARGLPWQSSDQDIAKFFRGLNVAKG--GVALCLSPLGRRNGEALIRFVCQEHR 333
            :::|||...::||:||||..:.:|:..||....:..|  |:...|:..|:|.|:|||....::..
Human   142 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDV 206

  Fly   334 DMALKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQAFLSKGAQVIIRMRGLPYDATAKQVLD 398
            ..||::|:.::|.||:|||..:.||..|:......::...::.|   ::|:|||||....|.::|
Human   207 QKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDG---VVRLRGLPYSCNEKDIVD 268

  Fly   399 FFTTGDTPPCHVLDGNEGVLFVKKPDG-RATGDAFVLFANETDAPKALGRHRESIGQRYIELFRS 462
            ||.     ..:::|    :.||....| |.||:|:|.|.....|.:||.:|||.||.||||:|.|
Human   269 FFA-----GLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 324

  Fly   463 TTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQLPLLPQV--GAHSLSHSLGASPANL--- 522
            ...||:..:             |..:...||..||.:....|::  ..|.::..:  .|...   
Human   325 RRNEVRTHV-------------GSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI--QPMTAFES 374

  Fly   523 -----CPPVPPPALPLPTQHLITSGTTKNC--IRLRGLPYEAMVEHILHFLDDFA--KHIIYQGV 578
                 .|...|..||    .....|||.:.  :.:||||::|..:.|::|   ||  |.:   .:
Human   375 EKEIELPKEVPEKLP----EAADFGTTSSLHFVHMRGLPFQANAQDIINF---FAPLKPV---RI 429

  Fly   579 HMVINAQGQPSGEAFIQMDLEES--ARLCAQRRHNHYMMFGKKYRYIEVF 626
            .|..::.|:.:|||.:..:..|.  |.:...|.|.|       :||||:|
Human   430 TMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVH-------HRYIELF 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fusNP_524691.1 DnaQ_like_exo 13..194 CDD:299142
RRM1_Fusilli 280..359 CDD:241182 28/80 (35%)
RRM2_Fusilli 363..462 CDD:241185 34/99 (34%)
RRM3_Fusilli 545..629 CDD:241187 25/88 (28%)
GRSF1NP_002083.4 RRM1_GRSF1 149..227 CDD:241174 27/77 (35%)
RRM2_GRSF1 249..322 CDD:240949 33/84 (39%)
RRM 307..>459 CDD:223796 46/176 (26%)
RRM3_GRSF1 401..475 CDD:241177 25/85 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165155216
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4211
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D392876at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.750

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