Protein Alignment Rs1 and RRP3

DIOPT Version :10

• Sequence 1: NP_651970.1
• Gene: Rs1 / 44087
• FlyBaseID: FBgn0021995
• Length: 782
• Species: Drosophila melanogaster
• Sequence 2: NP_011932.2
• Gene: RRP3 / 856462
• SGDID: S000001107
• Length: 501
• Species: Saccharomyces cerevisiae
• Alignment Length: 537
• Identity: 183/537 - (34%)
• Similarity: 279/537 - (51%)
• Gaps: 47/537 - (8%)

  Fly    66 LMKYVKRKARTKTDDKIAARLQK-RGGA-----EAVAAEQSDGSEIDLSEDELKHDNLRLREKKE 124
            :.|.||||.: |.:|::.:..:| |..|     :.:.||:..|||.|..||      ....:||.
Yeast     1 MSKIVKRKEK-KANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEED------ATAEKKKV 58

  Fly   125 SKKKKKKAGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIP 189
            .|.|.|.......|:..|          :|...||.::||...|::|...|.|..|||||:..||
Yeast    59 LKSKSKSTVSTQNENTNE----------DESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIP 113

  Fly   190 VALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQ 254
            .||.|.||.|.|.||:|||||:.:|.|.||.:    ::......:|.|||||..|:.:....|..
Yeast   114 PALEGHDIIGLAQTGSGKTAAFAIPILNRLWH----DQEPYYACILAPTRELAQQIKETFDSLGS 174

  Fly   255 FTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDE 319
            ...:.....:||:::..|...|.:.|.|:|||||||:||::||..|:|..::.|::|||||:||.
Yeast   175 LMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDM 239

  Fly   320 YFAEQMKEIINSC-CKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIR 383
            .|...:..|:... .:.|.|.||||||:.::..|...||..|:|..|:|..|....|.|..:.:
Yeast   240 EFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVV- 303

  Fly   384 EDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKK 448
              ..|.:...|..|:........::|.:||..|.||..|..||...|..|||:|.|.||:.||..
Yeast   304 --PGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDL 366

  Fly   449 FKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERK 513
            ||..:..:|:|||||||||||..|..|:|:.:|:.::.|||||||||||||:|.|:||..:.:.:
Yeast   367 FKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

  Fly   514 IVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLL 578
            ::..|     ..:..:.:|.|.::|  |.:.:|...:    |:...|     ...::::..::.:
Yeast   432 LILRI-----EEVLGKKLPKESVDK--NIILTLRDSV----DKANGE-----VVMEMNRRNKEKI 480

  Fly   579 GQTNERRGWFQTKQQRE 595
            .:...|||...|::..:
Yeast   481 ARGKGRRGRMMTRENMD 497

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rs1	NP_651970.1	SrmB	156..576	CDD:440279	153/420 (36%)
RRP3	NP_011932.2	SrmB	82..489	CDD:440279	155/429 (36%)