DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rs1 and AT4G16630

DIOPT Version :9

Sequence 1:NP_001286188.1 Gene:Rs1 / 44087 FlyBaseID:FBgn0021995 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_193396.3 Gene:AT4G16630 / 827364 AraportID:AT4G16630 Length:789 Species:Arabidopsis thaliana


Alignment Length:804 Identity:306/804 - (38%)
Similarity:447/804 - (55%) Gaps:92/804 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LDLIGTIED---------DAEVENLSEDSDAEVEY-------QPTKLRHKKVTEFEKGFEFVSSV 55
            |:||...||         :||.....||.|.|.||       :....:.|:..:.:..::|.|  
plant    15 LELIRNQEDSSEEDVKEGEAEEHEAGEDEDGEEEYEEEDDDEEEEDEKRKRDADAQSPWDFAS-- 77

  Fly    56 KEYNQDTWDDLMKYVKRKARTKTDDKIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLR 120
              |:....::    ..|:..|..|:||:..:|.|....::..|:.:..|.:.:.|          
plant    78 --YSSSVGEE----HARRHTTSIDEKISKAIQHRPVPISINEEEEEEEEEEDASD---------- 126

  Fly   121 EKKESKKKKKKAGEEDE------EDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAIGVLGYIY 179
              .|:.|:::...|:||      ||...|..|:.....:....:|.::||||||:||...|||..
plant   127 --AETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKK 189

  Fly   180 PTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQ 244
            ||||||:.||:||.|||:|..|.||:|||||:.||||||||:||....| ||||:|.|||||..|
plant   190 PTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFA-TRVLILTPTRELAVQ 253

  Fly   245 VYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLI 309
            ::.:.:.|.|||.|..||.:|||.|:.||.|||..||||:|||||:|||::|:.|..||.:.|||
plant   254 IHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 318

  Fly   310 LDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFN 374
            ||||||:|...||.::.|::..|.|.||||||||||:|:||:|..:||:||:::..:.:.:....
plant   319 LDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPG 383

  Fly   375 LRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQ 439
            |.:|.:|||..:|.::|.:|.||..|||....::|..||:.||||.||.||.|::|.||||||||
plant   384 LTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQ 448

  Fly   440 QQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISV 504
            .|||:||:.|:::::|.|||||||||||||:||:||||:..|...:.|:|||||||||||.|.:|
plant   449 AQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAV 513

  Fly   505 SLAGEKERKIVKDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQ 569
            :...:.:|.::|.|.|...|.:|:|:||.:.|.|:...:..:|.:...::..|:.||.|.|.|.:
plant   514 TFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAERDERALRKAEME 578

  Fly   570 LSKTERKLLGQTNE-----RRGWFQTKQQR----EAEKDRLALTTGDE----DKASGGKGKGKTA 621
            .:|.| .:|...:|     :|.||.|::::    :||||......|.|    |:|...|.|    
plant   579 FAKAE-NMLEHRDEIYARPKRTWFMTEKEKKLVAQAEKDSAGNPAGGELVSADRAEDLKMK---- 638

  Fly   622 GKRKRPEYGGDGEDGPPVK---DLEAKR---------NKKKKEEPRKKTPEQLAKERAMKEIEKV 674
            .||||     :.|...|.|   .|||.|         .:::.||..:|......|::..:|.:|.
plant   639 EKRKR-----EREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKK 698

  Fly   675 SL-------VRAKMAKLRKR---PGKLGAATEVHRSGASDGKPKRRGGQ--SAFTNDLTD--VSR 725
            .|       :|||..|.::|   .||:.......:...|..:.:.||.:  ..|.:|:.:  ..|
plant   699 GLTLKDLGYMRAKAVKAKQRAIDSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGR 763

  Fly   726 GGALRLRSEANRHKKMTKIAAKKK 749
            |||........:.|...|..|:.|
plant   764 GGAAAAAKPRTKSKNSFKSKARYK 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rs1NP_001286188.1 PTZ00424 148..537 CDD:185609 205/388 (53%)
DEADc 159..364 CDD:238167 121/204 (59%)
Helicase_C 393..498 CDD:278689 63/104 (61%)
AT4G16630NP_193396.3 DEADc 169..373 CDD:238167 121/204 (59%)
DEXDc 183..381 CDD:214692 112/198 (57%)
HELICc <414..515 CDD:238034 62/100 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 206 1.000 Domainoid score I826
eggNOG 1 0.900 - - E2759_KOG0338
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 470 1.000 Inparanoid score I356
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D268859at2759
OrthoFinder 1 1.000 - - FOG0004776
OrthoInspector 1 1.000 - - oto4023
orthoMCL 1 0.900 - - OOG6_102067
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2837
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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