DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rs1 and ddx54

DIOPT Version :9

Sequence 1:NP_001286188.1 Gene:Rs1 / 44087 FlyBaseID:FBgn0021995 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_002934380.1 Gene:ddx54 / 733994 XenbaseID:XB-GENE-1011576 Length:847 Species:Xenopus tropicalis


Alignment Length:874 Identity:226/874 - (25%)
Similarity:370/874 - (42%) Gaps:228/874 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 KIAARLQKRGGAEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKKAGEEDEEDEGEKMQ 145
            ::.|..||..|.:..|...:|.:    |:.||   :.|...:.::|||||..|            
 Frog    29 RVKAAPQKEDGVKLPAFPTADAT----SDTEL---DTREMVRAQNKKKKKSGG------------ 74

  Fly   146 FADTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAA 210
                         |..|.||.|:.:.:...||..|||||...|||.|.|:|:...|.||:||||.
 Frog    75 -------------FQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTAC 126

  Fly   211 YMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAV 275
            :::|..|:|  :..:.:...|.|:|.|||||..|..:.||:|.:||.:...|.:||..::.|.|.
 Frog   127 FLIPMFEKL--KAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAA 189

  Fly   276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340
            |.:||||:|||||||: |:....:..|.::|.::.|||||:.:..||||::|||:...:||||:|
 Frog   190 LHENPDIIIATPGRLM-HVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLL 253

  Fly   341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLI-CRTF-H 403
            ||||:.:.:.:.|...|.:|:.:.::.:.:::..|:..|..:|.:   |:..:|..|: |... .
 Frog   254 FSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVE---DKPAVLLHLLRCVVKPQ 315

  Fly   404 DHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLD 468
            :..::||.||..|..|..||.:.|:....::..|.|..|..:|..|...::..|:.|||||||:|
 Frog   316 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVTDVAARGID 380

  Fly   469 IVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAG------------------------- 508
            |..:..|||:..|...:.::|||||.|||||:|.:.||..                         
 Frog   381 IPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYVYDLHLFLGRPLKLATAQM 445

  Fly   509 ----------------------------EKERKI----VKDIIKNA-ESTIKNRIIP-PEIIEKY 539
                                        ::||.:    :.::.:|| :..||:|..| ||.|::.
 Frog   446 METGADTDGVLGRVPQSLIDDEDALLITDRERSLELQNLHNVAENAYKQYIKSRPTPSPESIKRV 510

  Fly   540 RN---KLTSLEPEIQNILDEEQAER----------QLAKTEQQLSKTER----KLLGQTNERRGW 587
            ::   .|..:.|...:.|.||:.:|          :...|..:::.|.:    :::.......|.
 Frog   511 KDANYNLLGVHPLFWSQLGEEEMQRLKFVDGIKSYKSKATIFEINATNKTNASEVMRAKRSHDGK 575

  Fly   588 FQTKQQR-EAEKDRL--ALTTG----------DEDKASGGKGKGKTAGKRKRPEYGGDGEDGPPV 639
            ...|.|| :.||...  .||:|          ||:...|  ...:..||||..:           
 Frog   576 VIAKFQRLQEEKSATVQTLTSGISSLSCKQESDEENMEG--VFSQVLGKRKITD----------- 627

  Fly   640 KDLEAKRNKKKKEEPRKKT-------PEQLAKERAM----------------------------- 668
            || ||:.|||:|......|       |:....||.:                             
 Frog   628 KD-EAEGNKKRKAGTSHDTDYYIPYRPKDFESERGLSIGASSFEQAAAGAVLDLLGDQTEDLRKN 691

  Fly   669 KEIEKVSLVRAKMA---------KLRKRPGKLGAAT------------------------EVHRS 700
            |::.|....:.|..         |::...|:|.:::                        |....
 Frog   692 KQVMKWDRKKKKFVGTGGPEDKKKIKTESGRLISSSYKKNLYEGWKKKYKIDDQDSEEEDEERDQ 756

  Fly   701 GASDGKPKRRGGQSAFTNDLTDV-----------SRGGALRLRSEANRHKKMTKIAAKKKASSVK 754
            .|:.|:.|.|||:....:..:.:           |:...|:.|....:...:.|...||..:..:
 Frog   757 RAAAGRRKGRGGRGPQRSSHSSLGPQGKAKSELRSKQQILKTRKAQAKQNFLQKGGLKKMKNKTR 821

  Fly   755 -LTNKAGKNKFNKGKNFGGPRHAKKDKKK 782
             |.|...|:.|.:||:.|    .||.|.:
 Frog   822 HLANHMKKSAFGRGKSQG----FKKGKSR 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rs1NP_001286188.1 PTZ00424 148..537 CDD:185609 144/449 (32%)
DEADc 159..364 CDD:238167 86/204 (42%)
Helicase_C 393..498 CDD:278689 38/106 (36%)
ddx54XP_002934380.1 SrmB 51..477 CDD:223587 144/463 (31%)
DEADc_DDX54 73..277 CDD:350717 87/231 (38%)
DBP10CT 679..739 CDD:369712 6/59 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D268859at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.