DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rs1 and Hlc

DIOPT Version :9

Sequence 1:NP_001286188.1 Gene:Rs1 / 44087 FlyBaseID:FBgn0021995 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster


Alignment Length:560 Identity:147/560 - (26%)
Similarity:250/560 - (44%) Gaps:89/560 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 EANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPT 215
            :..::...|:::.|.:.:::|:..||:..||.||::.||:.|.|:|:...|.||:||||.|.||.
  Fly     3 QMTQKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPL 67

  Fly   216 LERLLYRPLN-NKAITRVLVLVPTRELGAQVYQVTKQL---CQFTTIDVGLAIGGLDVKAQEAVL 276
            ::::|...|| ::.....:||.||:||..|..:|.:||   |........:|....|...|...|
  Fly    68 IQKILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHAL 132

  Fly   277 RQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLF 341
            .::||||:|||..|:.:.:......|..:|.|::||||.:....:.:..|.:|.......|.:|.
  Fly   133 SESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLV 197

  Fly   342 SATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFI---RIREDKEGDREPILASLI-CRTF 402
            |||:::.|..:..:.|:.|:.:.:...:.|.    |:.:   ||..: |.|:..||.:|: .|..
  Fly   198 SATLTDDVVRMKGLCLNNPVTLKLEEPELVP----QDQLSHQRILAE-ENDKPAILYALLKLRLI 257

  Fly   403 HDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATD------ 461
            ....::||.:..:.:::.:.|...|:||..|:..|....|:.::.:|.:...|::||:|      
  Fly   258 RGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEK 322

  Fly   462 -------------------VAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLA 507
                               .|:||:|...|..||||..|.....||||.|||||....|..:|..
  Fly   323 PGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV 387

  Fly   508 GEKERKIVKDIIK---------NAESTIKNRIIPPEIIEKYR-----------------NKLTSL 546
            ..||.|:...:.|         ..|..|||.....|.:|.:|                 .::..:
  Fly   388 SMKESKVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIREI 452

  Fly   547 EPEIQN------ILDEEQAERQ---------LAKTEQQLS--------KTERKLLGQTNERRGWF 588
            :.||.|      ..:|.:.:.|         ..|.:..||        |..::::|.::...|..
  Fly   453 KIEILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVGTSSSPVGAS 517

  Fly   589 QTKQQRE-AEKDRLALTTGDEDKASG-GKGKGKTAGKRKR 626
            :.||.|: |.|........|...||. ..||.:.|.:||:
  Fly   518 EAKQPRQSAAKAAFERQVNDPLMASQVDFGKRRPAHRRKK 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rs1NP_001286188.1 PTZ00424 148..537 CDD:185609 121/427 (28%)
DEADc 159..364 CDD:238167 67/208 (32%)
Helicase_C 393..498 CDD:278689 37/130 (28%)
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 67/208 (32%)
DEXDc 24..231 CDD:214692 66/210 (31%)
HELICc 234..386 CDD:238034 42/152 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451706
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.