DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcr and LOC100487748

DIOPT Version :9

Sequence 1:NP_524688.1 Gene:Mcr / 44071 FlyBaseID:FBgn0267488 Length:1760 Species:Drosophila melanogaster
Sequence 2:XP_031762026.1 Gene:LOC100487748 / 100487748 -ID:- Length:539 Species:Xenopus tropicalis


Alignment Length:574 Identity:109/574 - (18%)
Similarity:212/574 - (36%) Gaps:164/574 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 NGTFDFKWPLRELEL-LVPNLANSEVLITATVGEKFYDEIISGYSVARVYNSSLRVVFLGDSPQV 546
            :|||.....|.||.| |:.:..:.::.|  ||.|:..:.:.          .|.:|.|   .|:|
 Frog    48 SGTFSKVLNLNELPLDLIGHYVDQKLNI--TVKEEATETLA----------HSPKVTF---DPEV 97

  Fly   547 ---FKPAMPFTTYLAVEYHDGSPIDPNLLRQGLMEVSGFVESRNGGRRDWPAQRLPMSQQSDGIW 608
               .||.:|:...:.:...:..|     ::..::|:.  ::..|       ...|....:....:
 Frog    98 LPSLKPGIPYVVGMTLRDRELKP-----MKNEVIELQ--IDYNN-------VHNLTTDAEGKAQY 148

  Fly   609 EVKIDIRNDLNLDDRPQARDFLNGVQNMRLQANFVDPRGERIQTE--------LLLVSHYSPRNQ 665
            |:      |:...:||.          :.:.||:.|| ||..:.|        ::....||....
 Frog   149 EI------DMATYERPY----------LFITANYKDP-GEESRPEWLDDPLDYIMAERFYSLTGS 196

  Fly   666 HIKVTTSTEKPVVGEYIIFHIRTNFYLE-----------EFNYLIMSKGVILVNDRETI------ 713
            :|:|....::...|:  .:.|...:.|.           .|.:|::|:|.|:.:...::      
 Frog   197 YIQVDYPQKELSCGK--TYDIPVRYLLSPEGLGGGIRNISFYFLMVSRGKIVSSGEHSVDVSDKL 259

  Fly   714 -----TE------------GIKTIAVVLSSEMAPVATIVVWKINQQGQVVADSLTFPVNGISRNN 761
                 ||            |..::::.:.|:.:|...|||:.: .|.:|:.......:....::.
 Frog   260 PCLRATEQDKNMDVNITRCGNFSLSLTMPSQYSPRINIVVYSM-LQAEVITGIAHLNMEKCLKHQ 323

  Fly   762 FTVYINNRKARTGEKVEVAIFGEPGSYVGLSGIDSAFYTMQAGNELT--------YAKIITKMSN 818
            .::..:..:...|..|.:.:..:|||..||..|||:........::|        |.:.|..|.|
 Frog   324 VSLSFSASEGAPGSDVYLMLKADPGSLCGLQIIDSSILLHNNKGQITAEELEYALYNQEIGFMQN 388

  Fly   819 F---DE------QTNGTYKHIWYSHEGNPDELVYFPASSFGVDANRTFEYSGLIVFTDGYVPRRQ 874
            .   :|      :.||:...::| .||:    .||           .|:.:|||..|:..: :|.
 Frog   389 HLVPEEPETPCIEVNGSDSVLFY-REGS----AYF-----------DFQNAGLIFATNTSL-QRP 436

  Fly   875 DTCNRTLGFGECLSGRCYRLEKQCDGLFDCDDGTDEINCHARNDTELLNYRKYRFN--------- 930
            ..|      |:....|.|...::.                ..::|:   |:|:.:|         
 Frog   437 WIC------GDLRRSRGYFFRQRM----------------MLHNTK---YKKHHYNTFEEQFPKV 476

  Fly   931 -RVLRHYENVWLWKDVNIGPHGRYIFNVEVPDRPAYWMVSAFSVSPSKGFGMMN 983
             ::...:..:|.:..|.:|..|.....:.|||..:.|..|.|.:|...|.||.|
 Frog   477 TKLKYAFPEIWSFDVVMVGESGSASVTLRVPDTSSQWQASMFCLSEESGLGMTN 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
McrNP_524688.1 A2M_N 232..332 CDD:280081
A2M_N_2 669..799 CDD:285005 29/163 (18%)
LDLa 886..913 CDD:238060 2/26 (8%)
A2M 940..1030 CDD:278630 15/44 (34%)
ISOPREN_C2_like 1177..1490 CDD:298658
A2M_comp 1226..1492 CDD:284982
A2M_recep 1607..1695 CDD:284981
LOC100487748XP_031762026.1 MG4 102..170 CDD:407661 15/98 (15%)
A2M_N_2 198..362 CDD:400170 30/166 (18%)
A2M 487..>533 CDD:395153 15/44 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D177369at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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