DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL30 and LOC100361143

DIOPT Version :9

Sequence 1:NP_001260550.2 Gene:RpL30 / 44059 FlyBaseID:FBgn0086710 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_002729075.1 Gene:LOC100361143 / 100361143 RGDID:2320718 Length:113 Species:Rattus norvegicus


Alignment Length:108 Identity:81/108 - (75%)
Similarity:90/108 - (83%) Gaps:0/108 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVAVKKQKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAM 65
            ||..|..||:|||.|:||.:|||||||.||||||||.:||||||||::|:|..||||||||||||
  Rat     1 MVVTKNTKKSLESINSRLQIVMKSGKYILGYKQTLKMIRQGKAKLVILANNCLALRKSEIEYYAM 65

  Fly    66 LAKTEVQHYSGTNIELGTACGKYFRVCTLSITDPGDSDIIRSL 108
            |.||.|.||.|.||||||.||||:||.||:|.|||||||||||
  Rat    66 LTKTGVHHYCGNNIELGTVCGKYYRVYTLAIIDPGDSDIIRSL 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL30NP_001260550.2 PTZ00106 2..109 CDD:185450 80/107 (75%)
LOC100361143XP_002729075.1 PTZ00106 2..108 CDD:185450 78/105 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351816
Domainoid 1 1.000 158 1.000 Domainoid score I4009
eggNOG 1 0.900 - - E1_COG1911
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 179 1.000 Inparanoid score I3909
OMA 1 1.010 - - QHG62191
OrthoDB 1 1.010 - - D1503991at2759
OrthoFinder 1 1.000 - - FOG0001538
OrthoInspector 1 1.000 - - otm45561
orthoMCL 1 0.900 - - OOG6_100932
Panther 1 1.100 - - O PTHR11449
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1111
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.810

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