DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PSG8 and lad-2

DIOPT Version :9

Sequence 1:NP_874366.1 Gene:PSG8 / 440533 HGNCID:9525 Length:426 Species:Homo sapiens
Sequence 2:NP_001023496.1 Gene:lad-2 / 177078 WormBaseID:WBGene00002243 Length:1187 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSG8NP_874366.1 Ig_CEACAM_D1 36..138 CDD:319315
Ig 148..236 CDD:325142
Ig 241..329 CDD:325142
Ig_2 335..413 CDD:316418
lad-2NP_001023496.1 IG_like 48..116 CDD:214653
Ig 49..121 CDD:299845
Ig 124..214 CDD:299845
IG_like 244..325 CDD:214653
Ig 255..325 CDD:299845
I-set 335..421 CDD:254352
Ig4_L1-NrCAM_like 344..422 CDD:143179
IG_like 438..515 CDD:214653
Ig 443..516 CDD:299845
IG_like 527..608 CDD:214653
Ig 535..>593 CDD:299845
FN3 610..697 CDD:238020
FN3 721..804 CDD:238020
fn3 823..909 CDD:278470
FN3 921..1010 CDD:238020
FN3 1016..1108 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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