DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shc and Shc1

DIOPT Version :9

Sequence 1:NP_524683.2 Gene:Shc / 44052 FlyBaseID:FBgn0015296 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001106802.1 Gene:Shc1 / 20416 MGIID:98296 Length:579 Species:Mus musculus


Alignment Length:449 Identity:183/449 - (40%)
Similarity:248/449 - (55%) Gaps:61/449 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GDAGNRSGS--GTTSDGCIYPDDVIMGVGVAFNVRYTGCVEVKTSMKSLDFETRTQLARECINRV 67
            |:...|.||  ...:.|.::|:|.:||.||::.|||.|||||..||::|||.||||:.||.|:.|
Mouse   131 GEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLV 195

  Fly    68 CEAA-GLKSAGKRR------LTNFISDRPSMQHAGTNIIINVSSRALSLSNVETGEVIANHNMPR 125
            |||. |.|.|.:||      |::.:. |.:::.||..|.:.||:.:|:|...:..::||||:|..
Mouse   196 CEAVPGAKGATRRRKPCSRPLSSILG-RSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQS 259

  Fly   126 ISFASGGDNDTLDFLAYIAKNEDEWRACYVLECAGGQSEDLIVTIGKAFALRFNALSRLNDP--- 187
            ||||||||.||.:::||:||:....|||::|||..|.::|:|.|||:||.|||....| |.|   
Mouse   260 ISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR-NPPKLV 323

  Fly   188 ---SADCNINQSCKENVKE------YYNDLPNKLPP---EVPEPQQQQVQQPLHPHAPRVAQLNL 240
               ......:.|..:..:|      ||||.|.|.||   .|....::...:|..|.|...:.|..
Mouse   324 TPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAARPTLPSAQMSSHLGA 388

  Fly   241 KKPRDRLSSNLIDLNS----PPP--------DQTTNKLGHFDPL-QATTAANSVLPSV-----RD 287
            ..|..:.::...::..    |||        |.:...:.:.|.. ||...|....||:     ||
Mouse   389 TLPIGQHAAGDHEVRKQMLPPPPCPGRELFDDPSYVNIQNLDKARQAGGGAGPPNPSLNGSAPRD 453

  Fly   288 VFD------------GPQC-----PLTAEVWFHAGISRPISERLLQQDGDFLVRESQGKRGQYVL 335
            :||            .||.     .|..|.|||..:||..:|.|||.:||||||||....|||||
Mouse   454 LFDMKPFEDALRVPPPPQSMSMAEQLQGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVL 518

  Fly   336 TGLEGKTPKHLLLIDPEGVVRTKDRIFDSISHLINYHWAHALPIISEDSELVLRNPVRR 394
            |||:...||||||:||||||||||..|:|:||||:||..:.|||||..|||.|:.||.|
Mouse   519 TGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVDR 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShcNP_524683.2 PTB_Shc 19..178 CDD:269920 79/165 (48%)
SH2_SHC 293..396 CDD:198179 64/107 (60%)
Shc1NP_001106802.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..137 1/5 (20%)
PTB_Shc 146..317 CDD:269920 81/171 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 337..357 6/19 (32%)
CH1 340..483 32/142 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 432..451 5/18 (28%)
SH2_SHC 476..578 CDD:198179 63/102 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849851
Domainoid 1 1.000 143 1.000 Domainoid score I4622
eggNOG 1 0.900 - - E1_KOG3697
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 276 1.000 Inparanoid score I2925
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG49816
OrthoDB 1 1.010 - - D1351843at2759
OrthoFinder 1 1.000 - - FOG0001057
OrthoInspector 1 1.000 - - otm42548
orthoMCL 1 0.900 - - OOG6_108540
Panther 1 1.100 - - O PTHR10337
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8103
SonicParanoid 1 1.000 - - X710
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.800

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