DRSC/TRiP Functional Genomics Resources

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Protein Alignment msn and AT4G24100

DIOPT Version :9

Sequence 1:NP_524679.3 Gene:msn / 44030 FlyBaseID:FBgn0010909 Length:1504 Species:Drosophila melanogaster
Sequence 2:NP_001328320.1 Gene:AT4G24100 / 828510 AraportID:AT4G24100 Length:725 Species:Arabidopsis thaliana


Alignment Length:700 Identity:185/700 - (26%)
Similarity:291/700 - (41%) Gaps:122/700 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 FELIEVVGNGTYGQVYKGRHTKTGQLAAIKVMDV--TEDEEEEIKLEINVLKKYSNHRNIATYYG 94
            ::|:|.:|:|....||:..:..|.::.|||.:|:  .....::|:.|...: ...:|.|:...:.
plant    49 YKLMEEIGHGASAVVYRAIYLPTNEVVAIKCLDLDRCNSNLDDIRRESQTM-SLIDHPNVIKSFC 112

  Fly    95 AFIKKSPPGKDDQLWLVMEYCGAGSVTDLVKSTKGQSLKEEWIAYICREILRGLSYLHSNKVIHR 159
            :|      ..|..||:||.:...||...|:|:......:|..|..:.:|.|:.|.|||....|||
plant   113 SF------SVDHSLWVVMPFMAQGSCLHLMKTAYSDGFEESAICCVLKETLKALDYLHRQGHIHR 171

  Fly   160 DIKGQNVLLTDNAEVKLVDFGVSAQL----DRTIGRRNTFIGTPYWMAPEVIACDENPDATYDNR 220
            |:|..|:||.||.|:||.||||||.|    ||. ..||||:|||.||||||:    .|...|:::
plant   172 DVKAGNILLDDNGEIKLGDFGVSACLFDNGDRQ-RARNTFVGTPCWMAPEVL----QPGNGYNSK 231

  Fly   221 SDLWSLGITALEMAESQPPLCDLHPMRALFLIPRNSPPRL---KSKKWSKKFHGFIDTVLVKDYH 282
            :|:||.||||||:|....|.....||:.|.:..:|:||.|   :.||:||.|...:...||||..
plant   232 ADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQT 296

  Fly   283 QRPYTENLLKHGFIK-DQPTDRQVRIQLKD--HIDRCKKRKQEKEREDYRYSGSDNDDDEPQLAG 344
            :||..|.||||...| .:|.::.|:|...|  .:....|..|:|:.:..........|:|.....
plant   297 KRPTAEKLLKHSCFKHTKPPEQTVKILFSDLPPLWTRVKSLQDKDAQQLALKRMATADEEAISQS 361

  Fly   345 EHSSIVQAPGGDTLRRNFQQ---IQEGRLAAEQQQQHHLMAQAQAQAAAAHAAAQAQAQLQQQQQ 406
            |:...|.|...|......|.   |.:..|...::.:..|.||..              ::..::|
plant   362 EYQRGVSAWNFDVRDLKTQASLLIDDDDLEESKEDEEILCAQFN--------------KVNDREQ 412

  Fly   407 QAAAAAAAAAHAAQQAQQAAQQAQAQQPQANRQPKPPSRQQ----------VEEPGPPARPPQRL 461
                        ...:.|..:....::..:|.:.:.|:.::          :|...|.:.     
plant   413 ------------VFDSLQLYENMNGKEKVSNTEVEEPTCKEKFTFVTTTSSLERMSPNSE----- 460

  Fly   462 IVVPDPPHAN-RPLPPTPKCGEPAGQTPQQQQRNSQNNFKPSLPPRRPEPQPQTAAGGQGSQQQA 525
               .|.|.|. :||....:.|....:|......:.:::..     .|.|.:||||.    :.::|
plant   461 ---HDIPEAKVKPLRRQSQSGPLTSRTVLSHSASEKSHIF-----ERSESEPQTAP----TVRRA 513

  Fly   526 QPEAPPRN--NRQSSGLSSSGGSASGGGGSS---KPAAALPQQ-------SNNHLGQPVNPLDPL 578
            ...:.|.|  .|.||...|:....|||...|   |..|.|.|:       .|..|.:.|    ||
plant   514 PSFSGPLNLSTRASSNSLSAPIKYSGGFRDSLDDKSKANLVQKGRFSVTSGNVDLAKDV----PL 574

  Fly   579 DSSDSDSEPDEPNDRARNDGTLLASDPPKPLPGLGPVSEDANTTTPLSHGSGGPPNRPLPPTPDD 643
            ......|....|..::.:.|..:          |.|....|...|...|.|....:.|:.|..  
plant   575 SIVPRRSPQATPLRKSASVGNWI----------LEPKMPTAQPQTIKEHSSHPTSSSPIMPQL-- 627

  Fly   644 DDQAGDRTLIMKRKLEQN-----INRLQKSAST--SQANVTPSRRGDESN 686
                  :.|..:..::|:     :|.||...:|  ||:...|.....:||
plant   628 ------QHLFQQNSIQQDLIMNLLNSLQPVEATEGSQSGKLPPLPRSDSN 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msnNP_524679.3 STKc_myosinIII_N_like 25..296 CDD:270785 104/272 (38%)
S_TKc 32..296 CDD:214567 104/272 (38%)
CNH 1183..1484 CDD:214481
AT4G24100NP_001328320.1 STKc_OSR1_SPAK 47..310 CDD:270787 104/272 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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