DRSC/TRiP Functional Genomics Resources

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Protein Alignment msn and hpo

DIOPT Version :9

Sequence 1:NP_524679.3 Gene:msn / 44030 FlyBaseID:FBgn0010909 Length:1504 Species:Drosophila melanogaster
Sequence 2:NP_001261092.1 Gene:hpo / 37247 FlyBaseID:FBgn0261456 Length:669 Species:Drosophila melanogaster


Alignment Length:629 Identity:189/629 - (30%)
Similarity:293/629 - (46%) Gaps:116/629 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 APSVNCSLDDIDL------TALKDPAGIFELIEVVGNGTYGQVYKGRHTKTGQLAAIKVMDVTED 68
            :|:::.|.....|      :.|:.|..:|:::..:|.|:||.|||..|.::..:.|||::.|..|
  Fly    14 SPNISSSCSFFKLKKLSEESLLQPPEKVFDIMYKLGEGSYGSVYKAVHKESSSIVAIKLVPVESD 78

  Fly    69 EEEEIKLEINVLKKYSNHRNIATYYGAFIKKSPPGKDDQLWLVMEYCGAGSVTDLVKSTKGQSLK 133
            ..|.|| ||::::: .:...:..|||::.|:.      .||:.|||||||||:|:::..| ::|.
  Fly    79 LHEIIK-EISIMQQ-CDSPYVVRYYGSYFKQY------DLWICMEYCGAGSVSDIMRLRK-KTLT 134

  Fly   134 EEWIAYICREILRGLSYLHSNKVIHRDIKGQNVLLTDNAEVKLVDFGVSAQLDRTIGRRNTFIGT 198
            |:.||.|..:.|:||.|||..:.||||||..|:||......||.||||:.||..|:.:|||.|||
  Fly   135 EDEIATILSDTLQGLVYLHLRRKIHRDIKAANILLNTEGYAKLADFGVAGQLTDTMAKRNTVIGT 199

  Fly   199 PYWMAPEVIACDENPDATYDNRSDLWSLGITALEMAESQPPLCDLHPMRALFLIPRNSPPRLKS- 262
            |:|||||||     .:..||..:|:||||||||||||.:||..::|||||:|:||:..||..:. 
  Fly   200 PFWMAPEVI-----EEIGYDCVADIWSLGITALEMAEGKPPYGEIHPMRAIFMIPQKPPPSFREP 259

  Fly   263 KKWSKKFHGFIDTVLVKDYHQRPYTENLLKHGFIKDQPTDRQVRIQLKDHIDR-CKKRKQEKERE 326
            .:||.:|..|:...|||:...|.....||:|.||:    :.:.|..||..::. |..|  |::|.
  Fly   260 DRWSTEFIDFVSKCLVKEPDDRATATELLEHEFIR----NAKHRSILKPMLEETCAIR--EQQRA 318

  Fly   327 DYRYSGSDNDDDEPQLAGEHSSIVQAPGGDTLRRNFQQIQEGRLAAEQQQQHHLMAQAQAQAAAA 391
            :..:.|.........||.:.:.:.|     .:..|......|.|..|:..::.     |:.|:.|
  Fly   319 NRSFGGVLAASQAKSLATQENGMQQ-----HITDNAFMEDPGTLVPEKFGEYQ-----QSSASDA 373

  Fly   392 HAAAQAQAQLQQ--------QQQQAAAAAAAAAHAAQQAQQAAQQA------------------- 429
            ...|.|:..:.:        :....|||.|||:.||......|..:                   
  Fly   374 TMIAHAEQGVDEGTLGPGGLRNLSKAAAPAAASSAASPLDMPAVDSGTMVELESNLGTMVINSDS 438

  Fly   430 -QAQQPQANRQPKPPSRQQVEEPGPPARPPQRLIVVPDPPHANR-----------PLPP--TPKC 480
             .:...:.|...||.:|.:          ||.|      .|.:|           |:..  :|..
  Fly   439 DDSTTAKNNDDQKPRNRYR----------PQFL------EHFDRKNAGDGRGDEKPIATEYSPAA 487

  Fly   481 GEPAGQTPQQQQRNSQ------------NNFKPSLPPRRPEPQPQTAAGGQGSQQQAQ------- 526
            .|...|..||||:..|            ||::.::..:..:.......|.|..|||.|       
  Fly   488 AEQQQQQQQQQQQQQQDEQHLASGANDLNNWEHNMEMQFQQISAINQYGLQQHQQQQQVLMAYPL 552

  Fly   527 --PEAPPRNNRQSSGLSSSGGSASGGGGSSKPAAALPQQSNNHL 568
              .:....||:.:..||::......|..::.||...|...|.|:
  Fly   553 MNEQLIALNNQPNLLLSNAAPMGQQGIPAAAPAQPPPAYQNQHM 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msnNP_524679.3 STKc_myosinIII_N_like 25..296 CDD:270785 119/271 (44%)
S_TKc 32..296 CDD:214567 117/264 (44%)
CNH 1183..1484 CDD:214481
hpoNP_001261092.1 STKc_MST1_2 38..293 CDD:132943 118/268 (44%)
S_TKc 42..293 CDD:214567 117/264 (44%)
Mst1_SARAH 608..655 CDD:288481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438561
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48015
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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