DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msn and LOC100495971

DIOPT Version :9

Sequence 1:NP_524679.3 Gene:msn / 44030 FlyBaseID:FBgn0010909 Length:1504 Species:Drosophila melanogaster
Sequence 2:XP_031756431.1 Gene:LOC100495971 / 100495971 -ID:- Length:410 Species:Xenopus tropicalis


Alignment Length:405 Identity:144/405 - (35%)
Similarity:224/405 - (55%) Gaps:35/405 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 VGNGTYGQVYKGRHTKTGQLAAIKVMDVTEDEEEEIKLEINVLKKYSNHRNIATYYGAFIKKSPP 102
            :|.|..|.|:.|.|.:.|:: |:|:.::|.|||...: |::.|.|:|.|||||:||||:...:|.
 Frog    28 IGEGGTGAVFMGHHHRRGKV-AVKMANITRDEESVCR-EVSFLLKFSRHRNIASYYGAYYHPAPN 90

  Fly   103 GKDDQ-LWLVMEYCGAGSVTDLVKSTKGQSLKEEWIAYICREILRGLSYLHSNKVIHRDIKGQNV 166
            .:..: |.||:|||..||:.||:.||:||||||.||.|:|||:|:.|:::|.::.:|||||..||
 Frog    91 EESSEYLELVLEYCSGGSLYDLIDSTEGQSLKETWIGYVCREVLKTLNHIHHHRAVHRDIKSPNV 155

  Fly   167 LLTDNAEVKLVDFGVSAQLDRTIGRRNTFIGTPYWMAPEVI-ACDENPDATYDNRSDLWSLGITA 230
            :||....:||:|||:...||...|:.|...||.:|||||.. ..|..|:  :|.:.|:|||||||
 Frog   156 MLTKKGNIKLIDFGLCWDLDPQTGKCNQADGTAHWMAPEAFRRRDREPE--FDTKCDIWSLGITA 218

  Fly   231 LEMAESQPPLCDLHPMRALFLIPRNSPPRLKSKKWSKKFHGFIDTVLVKDYHQRPYTENLLKHGF 295
            :||||.:.|..|...:..|.:  .|..|||.|:.||:.|..|:::.|.||..:|...|.||:|.|
 Frog   219 IEMAEGKTPYADQELVSDLII--NNDSPRLISRTWSETFVSFLESCLEKDPSRRWSAEELLQHPF 281

  Fly   296 IKDQPTDRQVRIQLKDHIDRCKKRKQEKEREDYRYSGSDNDDDEPQLAGEHSSIVQAPGGDTLRR 360
            |.:.|..:.:|.::::|:...:.|..::.....|::       ..||......         |||
 Frog   282 ITELPPAKTIRAEIEEHLRAVQNRPAKQGLRAVRWA-------RKQLRRARKQ---------LRR 330

  Fly   361 NFQQIQEGR--LAAEQQQQHHLMAQAQAQAAAAHAAAQAQAQLQQQQQQAAAAAAAAAHAAQQAQ 423
            ..:|::..|  |......:|.|.|:.|.:        ||:.||:|.::| .....|..|..:...
 Frog   331 AREQLRGAREHLWPRWAMEHLLRAREQLR--------QAREQLRQAREQ-LRPCCAMEHLRRACD 386

  Fly   424 QAAQQAQAQQPQANR 438
            ..|.:...:|.:|.:
 Frog   387 FCATETSPEQKEAQQ 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msnNP_524679.3 STKc_myosinIII_N_like 25..296 CDD:270785 114/259 (44%)
S_TKc 32..296 CDD:214567 114/259 (44%)
CNH 1183..1484 CDD:214481
LOC100495971XP_031756431.1 PKc_STE 27..282 CDD:270692 114/259 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.