DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and NSR1

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_011675.1 Gene:NSR1 / 853064 SGDID:S000003391 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:101 Identity:31/101 - (30%)
Similarity:51/101 - (50%) Gaps:7/101 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 PTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHG 171
            |..:.||.|.:.:.:..:|:.|...|.:..|.|.|:| :.||.|...|.||.::.|.|||::..|
Yeast   167 PATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQG 231

  Fly   172 VPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGT 207
            ..:||||:...::.|      :|....|..::.|.|
Yeast   232 KEIDGRPINCDMSTS------KPAGNNDRAKKFGDT 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 26/76 (34%)
RRM_THOC4 109..183 CDD:410081 25/74 (34%)
FoP_duplication 202..>260 CDD:464005 2/6 (33%)
NSR1NP_011675.1 RRM1_gar2 169..244 CDD:409881 25/74 (34%)
RRM2_gar2 269..341 CDD:409882
Blue background indicates that the domain is not in the aligned region.

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