Protein Alignment Ref1 and AT5G59950

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001190572.1
• Gene: AT5G59950 / 836117
• AraportID: AT5G59950
• Length: 245
• Species: Arabidopsis thaliana
• Alignment Length: 268
• Identity: 105/268 - (39%)
• Similarity: 136/268 - (50%)
• Gaps: 47/268 - (17%)

  Fly     5 IEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPGSVLKGPRGG 69
            ::|||||:|...|.      :|||.|.||.||.... .|..||...|               |..
plant     5 LDMSLDDMIAKNRK------SRGGAGPARGTGSGSG-PGPTRRNNPN---------------RKS 47

  Fly    70 VAAGAVQKAKFPRGDVNSAWKHDMYDGPK------RGAVGGGSGPTRLIVGNLDYGVSNTDIKEL 128
            ..:...|.||.|    .|.|.|||:....      |.:.|..:| |:|.:.||||||.|.|||||
plant    48 TRSAPYQSAKAP----ESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKEL 107

  Fly   129 FNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTR 193
            |.:.|.:|:..||:||||||.|||:|::.||.|||.|:|:|:.|.|||:||.|::..:::
plant   108 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL----- 167

  Fly   194 PVAATDVKRRVGGT---APTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPP---TAEE 252
            ..||....|...|.   ||.|   .|||..|..:||..|..||:...|..||..|.|.   :||:
plant   168 QTAAAPSGRPANGNSNGAPWS---RGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAED 229

  Fly   253 LDAELDSY 260
            |||:||.|
plant   230 LDADLDKY 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	65/158 (41%)
		RRM_THOC4	109..183	CDD:410081	44/73 (60%)
		FoP_duplication	202..>260	CDD:464005	26/63 (41%)
AT5G59950	NP_001190572.1	RRM_THOC4	88..162	CDD:410081	44/73 (60%)