DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and CP33

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_190806.1 Gene:CP33 / 824403 AraportID:AT3G52380 Length:329 Species:Arabidopsis thaliana


Alignment Length:225 Identity:49/225 - (21%)
Similarity:85/225 - (37%) Gaps:53/225 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSP------------RKPG 60
            |.||.|:::..:::.....|..|.......:|........|....|..|            .:.|
plant    76 SADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAG 140

  Fly    61 SVL-------------KGPRGGVAAGAVQKAK----------------------FPRGDVNSAWK 90
            :|:             :| .|.|..|::::||                      .|||..|...:
plant   141 TVVDVQIVYDKVTDRSRG-FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMR 204

  Fly    91 HDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADV 154
            ..:.|. .|..|   ..|.::..|||.:.:::..:|:.|.|...:..|.|.|:| :|||.|...:
plant   205 TKIRDN-NRSYV---DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFI 265

  Fly   155 IFERRADALKAIKQYHGVPLDGRPMTIQLA 184
            .||...:...|:...:||.::||.:.:.||
plant   266 SFESAENVQSALATMNGVEVEGRALRLNLA 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 41/200 (21%)
RRM_THOC4 109..183 CDD:410081 21/74 (28%)
FoP_duplication 202..>260 CDD:464005
CP33NP_190806.1 RRM_SF 117..196 CDD:473069 10/79 (13%)
RRM2_NsCP33_like 220..295 CDD:410187 21/74 (28%)
Blue background indicates that the domain is not in the aligned region.

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