Protein Alignment Ref1 and ATRZ-1A

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_189273.1
• Gene: ATRZ-1A / 822246
• AraportID: AT3G26420
• Length: 245
• Species: Arabidopsis thaliana
• Alignment Length: 136
• Identity: 37/136 - (27%)
• Similarity: 58/136 - (42%)
• Gaps: 31/136 - (22%)

  Fly   110 RLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHGVP 173
            |..:|.|.:..|:..:::.|..:|.:.:|.|..|: ||||.|...:.|:.:....:||...:|:.
plant     8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMD 72

  Fly   174 LDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTAR-RGF----KRPVGG 233
            ||||.:|:..|                :...||.       |....|...| ||:    .||.||
plant    73 LDGRTITVDKA----------------QPHQGGA-------GRDNDGDRGRDRGYDRDRSRPSGG 114

  Fly   234 KPAAGG 239
            :  .||
plant   115 R--GGG 118

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	23/74 (31%)
		RRM_THOC4	109..183	CDD:410081	23/73 (32%)
		FoP_duplication	202..>260	CDD:464005	13/43 (30%)
ATRZ-1A	NP_189273.1	RRM2_NsCP33_like	8..83	CDD:410187	23/74 (31%)
		ZnF_C2HC	120..135	CDD:197667
		U2AF_lg	136..>242	CDD:273727
		PRK04537	<208..240	CDD:235307