Protein Alignment Ref1 and SCL30A

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_187966.1
• Gene: SCL30A / 820559
• AraportID: AT3G13570
• Length: 262
• Species: Arabidopsis thaliana
• Alignment Length: 178
• Identity: 48/178 - (26%)
• Similarity: 68/178 - (38%)
• Gaps: 34/178 - (19%)

  Fly    99 RGAVGGGSG---PTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERR 159
            ||..||...   ||.|:|.||.:.....|::..|..|||:|...:..| .:|...|...:.|...
plant    24 RGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88

  Fly   160 ADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGG----------TAPTSFKR 214
            |||.:|..|..|..|.||.:|:..|..:   ..:|   |:::.|..|          .:|..:.|
plant    89 ADAAEAKHQMDGYLLLGRELTVVFAEEN---RKKP---TEMRTRDRGGRSNRFQDRRRSPPRYSR 147

  Fly   215 GGGQAGGTARRGFKRPVGGKPAAGGQRR-----------ER---KAPP 248
            ......|...|...|.....||...|.|           ||   ::||
plant   148 SPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPP 195

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	30/88 (34%)
		RRM_THOC4	109..183	CDD:410081	25/74 (34%)
		FoP_duplication	202..>260	CDD:464005	15/71 (21%)
SCL30A	NP_187966.1	RRM_SF	37..120	CDD:473069	26/85 (31%)
		PABP-1234	<39..252	CDD:130689	42/163 (26%)