DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and EIF3G1

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_001154607.1 Gene:EIF3G1 / 820313 AraportID:AT3G11400 Length:321 Species:Arabidopsis thaliana


Alignment Length:131 Identity:37/131 - (28%)
Similarity:52/131 - (39%) Gaps:19/131 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 KGPRG-----GVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGG----SGPTRLIVGNLDYG 119
            |.|.|     ..|.|..:.|..|         ..|..|..|.|||..    :....:.|.||...
plant   195 KPPTGESSTMSAAPGTGKAAYVP---------PSMRAGADRSAVGSDMRRRNDENSVRVTNLSED 250

  Fly   120 VSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQL 183
            ....|:.|||:.||.:.:..|..| ::|.|.|...|.|..|.||.:||.:.:|...|...:.::.
plant   251 TREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEW 315

  Fly   184 A 184
            |
plant   316 A 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 36/129 (28%)
RRM_THOC4 109..183 CDD:410081 23/74 (31%)
FoP_duplication 202..>260 CDD:464005
EIF3G1NP_001154607.1 eIF3g 31..186 CDD:463545
RRM_eIF3G_like 241..316 CDD:409842 23/74 (31%)
Blue background indicates that the domain is not in the aligned region.

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