Protein Alignment Ref1 and U11/U12-31K

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_187651.1
• Gene: U11/U12-31K / 820203
• AraportID: AT3G10400
• Length: 261
• Species: Arabidopsis thaliana
• Alignment Length: 180
• Identity: 57/180 - (31%)
• Similarity: 84/180 - (46%)
• Gaps: 31/180 - (17%)

  Fly    90 KHDMYDGPKRGAVGGGSG---PTR--LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGR-S 148
            ||......|..|.|||||   |::  |.|.|||:.::|:||..||:.||.:.:..|..||..| |
plant    33 KHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQS 97

  Fly   149 LGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRV--------- 204
            .|.|.|::..|.||.||.:......|:||.:|:.:|..:..      |:..:|:||
plant    98 RGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADNGR------ASEFIKKRVYKDKSRCYE 156

  Fly   205 -GGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTAEEL 253
             |.....|::....|.|..     :||  ..|...|:|:|.:.  .|||:
plant   157 CGDEGHLSYECPKNQLGPR-----ERP--PPPKKRGRRKEEEG--EAEEI 197

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	39/99 (39%)
		RRM_THOC4	109..183	CDD:410081	29/76 (38%)
		FoP_duplication	202..>260	CDD:464005	15/62 (24%)
U11/U12-31K	NP_187651.1	RRM_ZCRB1	56..131	CDD:409827	29/74 (39%)
		PTZ00368	154..>173	CDD:173561	3/18 (17%)