DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and AT2G21440

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_565513.1 Gene:AT2G21440 / 816683 AraportID:AT2G21440 Length:1003 Species:Arabidopsis thaliana


Alignment Length:191 Identity:42/191 - (21%)
Similarity:67/191 - (35%) Gaps:38/191 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 AAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPI 135
            |..||.|........|..|...:      |..|..:...:||:.||.:....:|||.:|:..|.:
plant   299 ACAAVAKLHQTEVKGNLIWARQL------GGEGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFV 357

  Fly   136 KKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATD 199
            ....:..: .:|...|.|.|.|..:.||..|||:::|.....||:.:..||              
plant   358 WDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAV-------------- 408

  Fly   200 VKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTAEELDAELDSY 260
                     |.:...|...|...:..|.|.        |.......:....||:|..::|:
plant   409 ---------PKNIYNGAADATTASADGDKE--------GSDGDSENSSVDLEEVDEAVESH 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 30/113 (27%)
RRM_THOC4 109..183 CDD:410081 22/74 (30%)
FoP_duplication 202..>260 CDD:464005 9/57 (16%)
AT2G21440NP_565513.1 RRM1_RBM28_like 21..99 CDD:409847
ELAV_HUD_SF 24..411 CDD:273741 33/140 (24%)
RRM2_RBM28_like 332..408 CDD:409848 22/75 (29%)
RRM3_RBM28_like 561..642 CDD:409849
RRM4_RBM28_like 713..810 CDD:409850
PTZ00121 <813..>968 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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