Protein Alignment Ref1 and Snrnp35

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_083808.1
• Gene: Snrnp35 / 76167
• MGIID: 1923417
• Length: 244
• Species: Mus musculus
• Alignment Length: 210
• Identity: 42/210 - (20%)
• Similarity: 73/210 - (34%)
• Gaps: 67/210 - (31%)

  Fly    94 YDGPKRGAVGG-------------------------GSGPTRLIVGNLDYGVSNTDIKELFNDFG 133
            ||..|.|::.|                         |.....|.|..|:.......:||:|:.:|
Mouse    11 YDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYG 75

  Fly   134 PIKKAAVHYDR-SGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAA 197
            .|::..:..|. :|.|.|.|.:.::.....:||.:...|:.:|...:.:..
Mouse    76 DIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDY-------------- 126

  Fly   198 TDVKRRVGGTAPTSFKRGGGQAGGTARRG----------FKRPVG-----GKPAAGGQR------ 241
             :::|.:.|..|   :|.||..||....|          |::|:.     .:|...|:|
Mouse   127 -ELERTLRGWIP---RRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNEPHREGKRERRERS 187

  Fly   242 --RERKAPPTAEELD 254
              |:|...|...|.|
Mouse   188 RSRDRHWDPRPRERD 202

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	23/115 (20%)
		RRM_THOC4	109..183	CDD:410081	17/74 (23%)
		FoP_duplication	202..>260	CDD:464005	19/76 (25%)
Snrnp35	NP_083808.1	RRM_snRNP35	47..137	CDD:409683	20/104 (19%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	146..244		12/57 (21%)