Protein Alignment Ref1 and hnrnpab

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: XP_012814656.1
• Gene: hnrnpab / 734098
• XenbaseID: XB-GENE-6042555
• Length: 326
• Species: Xenopus tropicalis
• Alignment Length: 186
• Identity: 48/186 - (25%)
• Similarity: 72/186 - (38%)
• Gaps: 42/186 - (22%)

  Fly    35 TGGQQRFAGGARRG----GANA------GGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAW 89
            |..||....|...|    .|.|      ||.....|..:...:|...||.|.       |::|
 Frog     4 TEQQQYMETGTENGHEACDAEAAESKVPGGQNGAEGDQINASKGEEDAGCVP-------DISS-- 59

  Fly    90 KHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTAD 153
              .:.:|.|            :.||.|.:..|..|:|:.|:.||.:....:..| .:|||.|...
 Frog    60 --PLTEGVK------------MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGF 110

  Fly   154 VIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAP 209
            ::|:..|...|.::|... .||||.:..:.|   :|:...|:.    |..|||..|
 Frog   111 ILFKDAASVDKVLEQKEH-RLDGRLIDPKKA---MAMKKDPIK----KIFVGGLNP 158

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	40/159 (25%)
		RRM_THOC4	109..183	CDD:410081	22/74 (30%)
		FoP_duplication	202..>260	CDD:464005	4/8 (50%)
hnrnpab	XP_012814656.1	CBFNT	1..52	CDD:311868	11/47 (23%)
		RRM1_hnRNPAB	61..140	CDD:410151	24/91 (26%)
		RRM2_hnRNPAB	145..224	CDD:409997	6/18 (33%)