DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and rbm8a

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_001039147.1 Gene:rbm8a / 733972 XenbaseID:XB-GENE-6250837 Length:174 Species:Xenopus tropicalis


Alignment Length:114 Identity:33/114 - (28%)
Similarity:54/114 - (47%) Gaps:7/114 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFG 133
            |..|....:|:. |.|.:|..:.....||:|...|     ..|.|..:....:..||.:.|.:||
 Frog    39 GFGADEGTRARI-REDYDSVEQDGDEPGPQRSVEG-----WILFVTGVHEEATEEDIHDKFGEFG 97

  Fly   134 PIKKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTI 181
            .||...::.| |:|...|.|.|.:|...:||.|::..:|..|.|:|:::
 Frog    98 EIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISV 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 33/114 (29%)
RRM_THOC4 109..183 CDD:410081 23/74 (31%)
FoP_duplication 202..>260 CDD:464005
rbm8aNP_001039147.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..70 9/31 (29%)
RRM_RBM8 67..154 CDD:409762 25/85 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..174 33/114 (29%)
Blue background indicates that the domain is not in the aligned region.

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