DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ref1 and myef2

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_001025455.2 Gene:myef2 / 641483 ZFINID:ZDB-GENE-051120-114 Length:553 Species:Danio rerio


Alignment Length:205 Identity:51/205 - (24%)
Similarity:87/205 - (42%) Gaps:31/205 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 GANAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSA-WKHDMYDGPKRGAVGGGSGPTRLI 112
            |.:|....::.|.:..|.||..::|    ...|....|:. ..|::....:.|.:|     ..:.
Zfish   160 GEHARRVLQRSGRMYGGGRGQDSSG----INIPPSIANNPNIPHEIISALQAGRLG-----ATIF 215

  Fly   113 VGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGR 177
            |.|||:.|....:||:|...|.:::|.|..|:.|:|.|...|.||:..:|::||..::|..|..|
Zfish   216 VANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDR 280

  Fly   178 PMTIQLAVSDVAVLT---RPV-AATDVKRRVGGTA---------------PTSFKRGGGQAGGTA 223
            .|.:::  .|.::..   ||| .:..:.|.:||..               ..|....||..||.:
Zfish   281 QMHVKM--DDKSLPPDDFRPVEKSPQLPRGLGGIGMGLGPGGQPINANCLSGSSMGPGGMDGGCS 343

  Fly   224 RRGFKRPVGG 233
            .......:||
Zfish   344 NMNRMSGMGG 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 37/135 (27%)
RRM_THOC4 109..183 CDD:410081 25/73 (34%)
FoP_duplication 202..>260 CDD:464005 10/47 (21%)
myef2NP_001025455.2 RRM1_MYEF2 82..157 CDD:410059
RRM2_MYEF2 212..287 CDD:410061 25/76 (33%)
RRM3_MYEF2 477..553 CDD:410063
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.