Protein Alignment Ref1 and snrnp35

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001025412.1
• Gene: snrnp35 / 569999
• ZFINID: ZDB-GENE-050706-77
• Length: 208
• Species: Danio rerio
• Alignment Length: 172
• Identity: 36/172 - (20%)
• Similarity: 65/172 - (37%)
• Gaps: 36/172 - (20%)

  Fly    97 PKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERRA 160
            |.||..  |.....|.|..|:...:...::::|:.||.|::..:..| .:|.|...|.:.::...
Zfish    40 PNRGVC--GDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEER 102

  Fly   161 DALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAG----- 220
            ...:|.:..:.:.||...:.:.:               :.:|.:.|..|.  :.||||.|
Zfish   103 SLKRAWRDANKLILDQYELLVDV---------------EQERTLPGWRPR--RLGGGQGGQKESG 150

  Fly   221 ----GTARRGFKRPVGGKPAAGGQRRERKAPPTAEELDAELD 258
                |...|.|::|:       .....|.|.|...|.:.|.|
Zfish   151 QLRFGGRDRPFRKPI-------NLSTRRPAEPRGRETERERD 185

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	18/87 (21%)
		RRM_THOC4	109..183	CDD:410081	14/74 (19%)
		FoP_duplication	202..>260	CDD:464005	18/66 (27%)
snrnp35	NP_001025412.1	RRM_snRNP35	46..139	CDD:409683	18/109 (17%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	133..208		17/62 (27%)