Protein Alignment Ref1 and alyref

DIOPT Version :9

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001098578.1
• Gene: alyref / 560127
• ZFINID: ZDB-GENE-070928-29
• Length: 280
• Species: Danio rerio
• Alignment Length: 288
• Identity: 129/288 - (44%)
• Similarity: 167/288 - (57%)
• Gaps: 43/288 - (14%)

  Fly     1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPGSVLKG 65
            |.||::||||||||..| |:.....|||.||   .||:....||.|.||..|.|.....|....|
Zfish     1 MADKMDMSLDDIIKQNR-QRGGGGGRGGRGG---RGGRGATTGGGRGGGGGASGRLGNTGGGFGG 61

  Fly    66 PRGG---------VAAGAVQKAKFPR-GDVNSAWKHDMYD-------GPKRGAVGGGSGPT---R 110
            ..||         ::.|..:.|.:.| ..:...|:||::|       |...|..|||:|..   :
Zfish    62 RGGGSGPMRNRQNLSRGRSRPAPYSRPKQLPDKWQHDLFDNGYSSNAGGGGGGGGGGAGVETGGK 126

  Fly   111 LIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLD 175
            |:|.|||:|||:.||:|||.:||.:|||||||||||||||||||.|||:||||||:|||:|||||
Zfish   127 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 191

  Fly   176 GRPMTIQLAVSDVAVLTR-PVAATD------VKRRVGGTAPTSFKRG-GGQAGGTARRGFKRPVG 232
            ||||.|||..|.:....| |:...:      .:.||||   ...::| ||:.||:..||    .|
Zfish   192 GRPMNIQLVTSQIDAQRRTPMQGLNRGGGGMNRNRVGG---FGMQKGRGGRGGGSRGRG----RG 249

  Fly   233 GKPAAGGQRRERKAPPTAEELDAELDSY 260
            |:...||.:::.    :||||||:||:|
Zfish   250 GRGGGGGSKQQL----SAEELDAQLDAY 273

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	RRM	<108..>187	CDD:223796	58/81 (72%)
		RRM_THOC4	109..183	CDD:241124	56/76 (74%)
		FoP_duplication	214..>265	CDD:290576	20/48 (42%)
alyref	NP_001098578.1	RRM	<126..>226	CDD:223796	61/99 (62%)
		RRM_THOC4	126..199	CDD:241124	56/72 (78%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170583242
Domainoid	1	1.000	116	1.000	Domainoid score	I5945
eggNOG	1	0.900	-	-		E1_KOG0533
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H38099
Inparanoid	1	1.050	194	1.000	Inparanoid score	I3826
OMA	1	1.010	-	-		QHG58344
OrthoDB	1	1.010	-	-		D1369069at2759
OrthoFinder	1	1.000	-	-		FOG0001223
OrthoInspector	1	1.000	-	-		oto41132
orthoMCL	1	0.900	-	-		OOG6_101458
Panther	1	1.100	-	-	LDO	PTHR19965
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X843
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	15	14.770