| Sequence 1: | NP_651968.1 | Gene: | Ref1 / 44029 | FlyBaseID: | FBgn0010774 | Length: | 266 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_062357.3 | Gene: | Alyref2 / 56009 | MGIID: | 1913144 | Length: | 218 | Species: | Mus musculus |
| Alignment Length: | 263 | Identity: | 112/263 - (42%) |
|---|---|---|---|
| Similarity: | 139/263 - (52%) | Gaps: | 55/263 - (20%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPGSVLKG 65
Fly 66 PRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSG---PTRLIVGNLDYGVSNTDIKE 127
Fly 128 LFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLT 192
Fly 193 RPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTAEELDAEL 257
Fly 258 DSY 260 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Ref1 | NP_651968.1 | RRM | <108..>187 | CDD:223796 | 58/78 (74%) |
| RRM_THOC4 | 109..183 | CDD:241124 | 56/73 (77%) | ||
| FoP_duplication | 214..>265 | CDD:290576 | 18/47 (38%) | ||
| Alyref2 | NP_062357.3 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..55 | 24/86 (28%) | |
| FYTT | 3..>32 | CDD:284488 | 17/56 (30%) | ||
| Sufficient for RNA-binding, interaction with NXF1-NXT1 | 16..37 | 7/50 (14%) | |||
| Interaction with HHV-8 ORF57 protein and with ICP27 from HHV-1 | 54..155 | 68/107 (64%) | |||
| RRM | <75..>157 | CDD:223796 | 59/81 (73%) | ||
| RRM_THOC4 | 75..149 | CDD:241124 | 56/73 (77%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 151..218 | 22/76 (29%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 116 | 1.000 | Domainoid score | I5923 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG0533 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 1 | 1.050 | 202 | 1.000 | Inparanoid score | I3746 |
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 1 | 1.010 | - | - | QHG58344 | |
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 1 | 1.000 | - | - | FOG0001223 | |
| OrthoInspector | 1 | 1.000 | - | - | otm42753 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_101458 | |
| Panther | 1 | 1.100 | - | - | O | PTHR19965 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R5291 |
| SonicParanoid | 1 | 1.000 | - | - | X843 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 1 | 0.960 | - | - | ||
| 13 | 12.860 | |||||