Protein Alignment Ref1 and alyref

DIOPT Version :9

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_001017027.1
• Gene: alyref / 549781
• XenbaseID: XB-GENE-973553
• Length: 260
• Species: Xenopus tropicalis
• Alignment Length: 281
• Identity: 133/281 - (47%)
• Similarity: 157/281 - (55%)
• Gaps: 49/281 - (17%)

  Fly     1 MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGANAGGSPRKPGSVLKG 65
            |.||::||||||||..|||:.....|||..|||  ||..|...|.|.||...||.
 Frog     1 MGDKMDMSLDDIIKLNRSQRPAGRGRGGGRGAR--GGSARGGAGGRIGGGRGGGG---------- 53

  Fly    66 PRGGVAAGAVQKAKFP---RGDVN------------SAWKHDMYD---GPKRGAVGGGSGPTRLI 112
              ||.|.|.......|   ||..|            ..|:||::|   |...|...||    :|:
 Frog    54 --GGAAGGGGPMRSRPVLTRGGRNRPAPYSRPKQLPDKWQHDLFDSGFGTGAGMETGG----KLL 112

  Fly   113 VGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGR 177
            |.|||:|||:.||:|||.:||.:|||||||||||||||||||.|||:||||||:|||:|||||||
 Frog   113 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 177

  Fly   178 PMTIQLAVSDVAVLTRPVAATDVKRRVGG-TAPTSFKRGGGQA-GGTARRGFKRPVGGKPAAG-G 239
            ||.|||..|.:....||:.:   :.|.|| |.|    |||... .|..|||.:   ||....| |
 Frog   178 PMNIQLVTSQIEAQRRPIQS---QSRGGGITRP----RGGAIGFSGANRRGGR---GGNRGRGRG 232

  Fly   240 QRRERKAPPTAEELDAELDSY 260
            ..|..|...:||||||:||:|
 Frog   233 AGRNPKQQLSAEELDAQLDAY 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	RRM	<108..>187	CDD:223796	58/78 (74%)
		RRM_THOC4	109..183	CDD:241124	56/73 (77%)
		FoP_duplication	214..>265	CDD:290576	22/49 (45%)
alyref	NP_001017027.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..89		37/101 (37%)
		RRM_THOC4	109..183	CDD:241124	57/77 (74%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	189..260		29/75 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	116	1.000	Domainoid score	I5895
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H38099
Inparanoid	1	1.050	195	1.000	Inparanoid score	I3711
OMA	1	1.010	-	-		QHG58344
OrthoDB	1	1.010	-	-		D1369069at2759
OrthoFinder	1	1.000	-	-		FOG0001223
OrthoInspector	1	1.000	-	-		otm47859
Panther	1	1.100	-	-	LDO	PTHR19965
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R5291
SonicParanoid	1	1.000	-	-		X843
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	12	12.110