DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and MYEF2

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_057216.3 Gene:MYEF2 / 50804 HGNCID:17940 Length:600 Species:Homo sapiens


Alignment Length:225 Identity:57/225 - (25%)
Similarity:92/225 - (40%) Gaps:51/225 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 KPGSVLKGPRGGVAAGAVQK--AKFPRGDV----------------NSAWKHDMYDGPKRGAVGG 104
            :|.::.:.|.|..|..|:|:  ..||.|.|                |.....::....:.|.:| 
Human   169 RPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPPSILNNPNIPPEVISNLQAGRLG- 232

  Fly   105 GSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQY 169
                :.:.|.|||:.|....:||:|:..|.:|:|.:..|:.|:|.|...|.||:..:|::||..:
Human   233 ----STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293

  Fly   170 HGVPLDGRPMTIQLAVSDVAVLTRPVAATDVK-----RRVGGTA--------PTSFKR------- 214
            :|..|..|||.:::  .|.:|......:.|.|     |.:||..        |.|..:       
Human   294 NGQFLFDRPMHVKM--DDKSVPHEEYRSHDGKTPQLPRGLGGIGMGLGPGGQPISASQLNIGGVM 356

  Fly   215 -----GGGQAGGTARRGFKRPVGGKPAAGG 239
                 ||....|....|..| :||....||
Human   357 GNLGPGGMGMDGPGFGGMNR-IGGGIGFGG 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 39/143 (27%)
RRM_THOC4 109..183 CDD:410081 26/73 (36%)
FoP_duplication 202..>260 CDD:464005 14/58 (24%)
MYEF2NP_057216.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..101
RRM1_MYEF2 101..176 CDD:410059 1/6 (17%)
PABP-1234 124..>596 CDD:130689 57/225 (25%)
RRM2_MYEF2 233..308 CDD:410061 26/76 (34%)
RRM3_MYEF2 524..600 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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