DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and msi1

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:XP_012816886.1 Gene:msi1 / 496961 XenbaseID:XB-GENE-490596 Length:347 Species:Xenopus tropicalis


Alignment Length:101 Identity:28/101 - (27%)
Similarity:47/101 - (46%) Gaps:6/101 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 PTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHG 171
            |.::.:|.|.:..:...::|.|:.||.:|:..|..| .:.||.|...|.|..:|...|.:.|...
 Frog    19 PCKMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 83

  Fly   172 VPLDGRPMTIQLAVSDVAVLTRPVAATDVKR-RVGG 206
             .||.:.:..::|....|   :|...|..|: .|||
 Frog    84 -ELDSKTIDPKVAFPRRA---QPKMVTRTKKIFVGG 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 20/76 (26%)
RRM_THOC4 109..183 CDD:410081 19/74 (26%)
FoP_duplication 202..>260 CDD:464005 3/6 (50%)
msi1XP_012816886.1 RRM1_MSI1 20..96 CDD:241203 19/76 (25%)
PABP-1234 <32..324 CDD:130689 25/88 (28%)
RRM2_MSI 110..183 CDD:240769 3/6 (50%)

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