DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and MSI1

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_002433.1 Gene:MSI1 / 4440 HGNCID:7330 Length:362 Species:Homo sapiens


Alignment Length:116 Identity:32/116 - (27%)
Similarity:51/116 - (43%) Gaps:8/116 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 DGPKRGAVGGGS--GPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIF 156
            |.|:.|.....|  .|.::.:|.|.:..:...::|.|..||.:|:..|..| .:.||.|...|.|
Human     4 DAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68

  Fly   157 ERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKR-RVGG 206
            ..:|...|.:.|... .||.:.:..::|....|   :|...|..|: .|||
Human    69 MDQAGVDKVLAQSRH-ELDSKTIDPKVAFPRRA---QPKMVTRTKKIFVGG 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 24/91 (26%)
RRM_THOC4 109..183 CDD:410081 19/74 (26%)
FoP_duplication 202..>260 CDD:464005 3/6 (50%)
MSI1NP_002433.1 RRM1_MSI 21..96 CDD:409990 19/75 (25%)
PABP-1234 <32..339 CDD:130689 25/88 (28%)
RRM2_MSI 110..183 CDD:240769 3/6 (50%)

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