DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and Rox8

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:188 Identity:46/188 - (24%)
Similarity:71/188 - (37%) Gaps:41/188 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 AAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPI 135
            |..|:.|..|...::...|.....:.||...    |....:.||:|...:....::|.|..||.|
  Fly    61 ALTAMNKRLFLEKEIKVNWATSPGNQPKTDI----SSHHHIFVGDLSPEIETETLREAFAPFGEI 121

  Fly   136 KKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATD 199
            ....:..| .:.:|.|.|.|.|.::|:|..||:..:|..:..|.:....:       ||.:    
  Fly   122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWS-------TRKL---- 175

  Fly   200 VKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAG----GQRRERKAPPTAEEL 253
                   ..|....:||||.||         :||.|..|    |.:|.     |.||:
  Fly   176 -------PPPREPSKGGGQGGG---------MGGGPGNGSGVKGSQRH-----TFEEV 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 28/113 (25%)
RRM_THOC4 109..183 CDD:410081 20/74 (27%)
FoP_duplication 202..>260 CDD:464005 16/56 (29%)
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788 4/18 (22%)
RRM2_TIA1_like 96..170 CDD:409789 20/73 (27%)
RRM_SF 221..292 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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