Protein Alignment Ref1 and rump

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Alignment Length: 258
• Identity: 64/258 - (24%)
• Similarity: 100/258 - (38%)
• Gaps: 50/258 - (19%)

  Fly    12 IIKSTRSQKKPQ---AARGGPGGARKTGGQQRFAGGARRGGANAG---------GSPRKPGSVLK 64
            ::|....:::.|   ..|.|.||....||.|...||...||...|         |..|:....|.
  Fly   129 VVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLS 193

  Fly    65 GPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVG--GGSGP--TRLIVGNLDYGVSNTDI 125
            |.         ........|.|::..:::| |.....:.  |.|||  .::.|.||||.|.|..:
  Fly   194 GR---------NNFNMMSNDYNNSSNYNLY-GLSASFLESLGISGPLHNKVFVANLDYKVDNKKL 248

  Fly   126 KELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQL------- 183
            |::|...|.::...:..|:.|.|.|.|.:.::...:|::||.......|..|.||::|
  Fly   249 KQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKN 313

  Fly   184 -------AVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGG---GQAGGTARRGFK-RPVGGKP 235
                   .:..|.:...|..  :..|.|....|    .||   ||..|.|::|.: ..||.:|
  Fly   314 EGIKLPEGLGGVGIGLGPNG--EPLRDVAHNLP----NGGQSQGQLLGNAQQGSQLGSVGSQP 370

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	44/179 (25%)
		RRM_THOC4	109..183	CDD:410081	22/73 (30%)
		FoP_duplication	202..>260	CDD:464005	13/38 (34%)
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	64/258 (25%)
		RRM1_hnRNPM_like	58..133	CDD:409819	1/3 (33%)
		RRM2_hnRNPM_like	234..307	CDD:409820	22/72 (31%)
		RRM_SF	565..629	CDD:473069