Protein Alignment Ref1 and hnrnpabb

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_998467.1
• Gene: hnrnpabb / 406594
• ZFINID: ZDB-GENE-040426-2516
• Length: 309
• Species: Danio rerio
• Alignment Length: 132
• Identity: 35/132 - (26%)
• Similarity: 58/132 - (43%)
• Gaps: 20/132 - (15%)

  Fly    90 KHDMYDGPKRGAVGGGSG-----------PTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD 143
            :.::..|...|..|.|.|           ..::.||.|.:..|..|:|:.|:.||.:....:..|
Zfish    15 EENLNGGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMD 79

  Fly   144 -RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVGGT 207
             .:|||.|...::| :.:|::..:.|.....||||.:..:.|   :|:...||.    |..|||.
Zfish    80 SNTGRSRGFGFILF-KESDSVDRVLQQKEHRLDGRQIDPKRA---MAIKKEPVK----KIFVGGL 136

  Fly   208 AP 209
            .|
Zfish   137 NP 138

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	26/105 (25%)
		RRM_THOC4	109..183	CDD:410081	21/74 (28%)
		FoP_duplication	202..>260	CDD:464005	4/8 (50%)
hnrnpabb	NP_998467.1	CBFNT	2..45	CDD:311868	5/29 (17%)
		RRM1_hnRNPAB	41..120	CDD:410151	21/79 (27%)
		RRM_SF	125..204	CDD:473069	7/18 (39%)