DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref1 and rbm4b

DIOPT Version :10

Sequence 1:NP_651968.1 Gene:Ref1 / 44029 FlyBaseID:FBgn0010774 Length:266 Species:Drosophila melanogaster
Sequence 2:NP_989204.1 Gene:rbm4b / 394812 XenbaseID:XB-GENE-494431 Length:338 Species:Xenopus tropicalis


Alignment Length:88 Identity:25/88 - (28%)
Similarity:41/88 - (46%) Gaps:7/88 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 GGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIK 167
            |.....|:|.|.||....::.:::..|.::|.:.:..:..|       .|.|..||.|:||.|||
 Frog    72 GKPKASTKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKD-------YAFVHMERSAEALDAIK 129

  Fly   168 QYHGVPLDGRPMTIQLAVSDVAV 190
            ........|:.|.:||:.|.:.|
 Frog   130 NLDNTEFKGKRMHVQLSTSRLRV 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref1NP_651968.1 sex-lethal 31..>184 CDD:273740 22/80 (28%)
RRM_THOC4 109..183 CDD:410081 20/73 (27%)
FoP_duplication 202..>260 CDD:464005
rbm4bNP_989204.1 RRM_SF 2..68 CDD:473069
RRM_SF 78..144 CDD:473069 20/72 (28%)
ZnF_C2HC 161..176 CDD:197667
COG5222 <162..>201 CDD:227547
Blue background indicates that the domain is not in the aligned region.

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