Protein Alignment Ref1 and rbm28

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_956615.2
• Gene: rbm28 / 393291
• ZFINID: ZDB-GENE-040426-960
• Length: 856
• Species: Danio rerio
• Alignment Length: 157
• Identity: 35/157 - (22%)
• Similarity: 70/157 - (44%)
• Gaps: 28/157 - (17%)

  Fly   109 TRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVP 173
            :|||:.||.:.....|:|::|::||.:.:|.:.....|:..|.|.|:|:|..:|.||:...:|..
Zfish   236 SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKK 300

  Fly   174 LDGRPMTIQLAVS-DVAVLTRPV-AATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPA 236
            :..|.:.:..|:: |..:.|:.. ||.::|                          :..|.||..
Zfish   301 IKDRQVAVDWAIAKDKYLATQSASAAGNIK--------------------------EENVTGKVE 339

  Fly   237 AGGQRRERKAPPTAEELDAELDSYIND 263
            ...:.::.|....:::.|:..|...:|
Zfish   340 EADENKDAKKKSISKKSDSSEDEDDDD 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	22/74 (30%)
		RRM_THOC4	109..183	CDD:410081	22/73 (30%)
		FoP_duplication	202..>260	CDD:464005	6/57 (11%)
rbm28	NP_956615.2	None