Protein Alignment Ref1 and tra2

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_476764.1
• Gene: tra2 / 36619
• FlyBaseID: FBgn0003742
• Length: 264
• Species: Drosophila melanogaster
• Alignment Length: 281
• Identity: 62/281 - (22%)
• Similarity: 105/281 - (37%)
• Gaps: 63/281 - (22%)

  Fly     2 VDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQR-----FAGGARRGGANAGGSPRKPGS 61
            :|:..:|...:..|.|.:.| ::|.....|...:|.:.|     :.|..|...:::....|...|
  Fly     1 MDREPLSSGRLHCSARYKHK-RSASSSSAGTTSSGHKDRRSDYDYCGSRRHQRSSSRRRSRSRSS 64

  Fly    62 VLKGP-----RGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRGAVGGGSGPTRLIVGNLDYGVS 121
            ....|     |.|            |...:....|...:.|:.....|        |..|:...|
  Fly    65 SESPPPEPRHRSG------------RSSRDRERMHKSREHPQASRCIG--------VFGLNTNTS 109

  Fly   122 NTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAV 185
            ...::||||.:|||::..:..| ::.||.|...:.||:.:||..|.....|:.:|||.:.:..::
  Fly   110 QHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSI 174

  Fly   186 SDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRR---ERKAP 247
            :..|  ..|.....:.|:..|.||.||         :.|||              ||   :|.|.
  Fly   175 TQRA--HTPTPGVYLGRQPRGKAPRSF---------SPRRG--------------RRVYHDRSAS 214

  Fly   248 P---TAEELDAELDSYINDMK 265
            |   ..:..|...|.|..:::
  Fly   215 PYDNYRDRYDYRNDRYDRNLR 235

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	37/163 (23%)
		RRM_THOC4	109..183	CDD:410081	23/74 (31%)
		FoP_duplication	202..>260	CDD:464005	16/63 (25%)
tra2	NP_476764.1	RRM_TRA2	96..175	CDD:409798	24/86 (28%)