Protein Alignment Ref1 and Caper

DIOPT Version :10

• Sequence 1: NP_651968.1
• Gene: Ref1 / 44029
• FlyBaseID: FBgn0010774
• Length: 266
• Species: Drosophila melanogaster
• Sequence 2: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Alignment Length: 153
• Identity: 38/153 - (24%)
• Similarity: 66/153 - (43%)
• Gaps: 6/153 - (3%)

  Fly   106 SGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYD-RSGRSLGTADVIFERRADALKAIKQY 169
            :||.||.||:|.:.::...::.:|..||.|....:..| .:|||.|...:.:....||.||::|.
  Fly   332 TGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396

  Fly   170 HGVPLDGRPM-----TIQLAVSDVAVLTRPVAATDVKRRVGGTAPTSFKRGGGQAGGTARRGFKR 229
            :|..|.||.|     |.:|.::..::.|..:..|.:.....|.....||...|......:.....
  Fly   397 NGFELAGRLMKVGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANA 461

  Fly   230 PVGGKPAAGGQRRERKAPPTAEE 252
            .:...|.....:::..||..|.:
  Fly   462 LLATAPQPAPLQQQEVAPSIATQ 484

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref1	NP_651968.1	sex-lethal	31..>184	CDD:273740	27/83 (33%)
		RRM_THOC4	109..183	CDD:410081	25/79 (32%)
		FoP_duplication	202..>260	CDD:464005	8/51 (16%)
Caper	NP_609095.1	SF-CC1	213..578	CDD:273721	38/153 (25%)